Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13580 487 / 2e-175 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 462 / 2e-165 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 369 / 1e-128 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G19260 241 / 2e-78 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013063 [exp] 588 / 0 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030571 [exp] 525 / 0 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 521 / 0 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10007964 [exp] 349 / 1e-120 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013494 [exp] 340 / 3e-117 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10019859 [exp] 222 / 5e-71 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10014055 [exp] 213 / 1e-67 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134700 [exp] 504 / 0 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 498 / 2e-179 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.015G055000 [exp] 430 / 9e-153 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.009G101800 [exp] 265 / 4e-88 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.004G141000 [exp] 255 / 2e-84 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10029096 pacid=23151690 polypeptide=Lus10029096 locus=Lus10029096.g ID=Lus10029096.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCCGAGATTCTGGATTCGATTGGCTGGGAGAATGAATCGTATCCAGCTTACCAAGACTACATTGTTCTTCCTGCTCTTGCTCTCTTCTTCC CCCCCGTCCGATTCCTTCTTGACAGATTCGTGTTTGAGAAAGTAGGGAGGAGAATGATCTTTGGGAAAGGGCACCATATTGTGAAGGATGAGGTAGAGGA CAGAAAGAAGATAAGGAAGTTCAAAGAATCGGCCTGGAAATGCGTTTACTATCTATCAGCAGAGGTTTTGGCTCTCACTGTCACATATAATGAGCCTTGG TTTACCAACACGAGATTCTTTTGGGTTGGCCCTGGAGATCAAGTGTGGCCAGATCAACAAATGAAGTTGAAGCTGAAAGGTCTGTACATGTATACTGCTG GATTTTATACGTATTCGATATTCGCTCTCATATTTTGGGAAACGAGACGTGCCGACTTTGGAGTCTCCATGGGGCATCATGTTGCCACTGTCATTCTCAT TGTTATGTCCTACATATTAAGATTCGGTCGTGCTGGTTCGATTGTCTTAGCTATTCACGATGCCAGCGATGTATTTTTGGAGGTGGGGAAGATGTCCAAG TATAGTGGCGCCGAAGGGATAGCGAGCTGTGCATTTATTCTTTTCGTATTATCGTGGATCTTGCTACGACTCATTTACTATCCATTTTGGATCCTCTGGA GTACAAGCTACGAAGTTGTGACAATCTTGGACATGAAGAAACACGAGAGAGATGGTCCGATCTTTTACTACTTGTTTAATTCTCTTCTGTACTGCCTCCT TGTGCTCCACATATATTGGTGGGTTTTGATTTATCGGATGCTGGTTAAGCAAATCCAAGCCAGAGGACAGCTAAGTGATGATGTTCGATCTGATTCTGAA GATGAAGGTGAACATGAAGATTAA
AA sequence Show only first row Show all	>Lus10029096 pacid=23151690 polypeptide=Lus10029096 locus=Lus10029096.g ID=Lus10029096.BGIv1.0 annot-version=v1.0 MAFAEILDSIGWENESYPAYQDYIVLPALALFFPPVRFLLDRFVFEKVGRRMIFGKGHHIVKDEVEDRKKIRKFKESAWKCVYYLSAEVLALTVTYNEPW FTNTRFFWVGPGDQVWPDQQMKLKLKGLYMYTAGFYTYSIFALIFWETRRADFGVSMGHHVATVILIVMSYILRFGRAGSIVLAIHDASDVFLEVGKMSK YSGAEGIASCAFILFVLSWILLRLIYYPFWILWSTSYEVVTILDMKKHERDGPIFYYLFNSLLYCLLVLHIYWWVLIYRMLVKQIQARGQLSDDVRSDSE DEGEHED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10029096 [exp]	0	1
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001370 [exp]	13.3	0.8227
AT3G15115			unknown protein		Lus10013678 [exp]	18.2	0.8201
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	19.0	0.8028
AT3G49720			unknown protein		Lus10007228 [exp]	22.2	0.8271
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	26.0	0.7956
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10043462 [exp]	26.7	0.8031
AT3G17120			unknown protein		Lus10037790 [exp]	27.0	0.8264
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10032394 [exp]	30.0	0.7899
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	30.8	0.7681
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	31.9	0.7574

Compare expression of checked genes

Lus10029096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.