Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26220 237 / 3e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT1G32070 102 / 1e-26 ATNSI nuclear shuttle interacting (.1.2.3) AT5G15770 44 / 7e-06 ATGNA1 glucose-6-phosphate acetyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013061 [exp] 323 / 2e-114 AT1G26220 244 / 6e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10003245 [exp] 112 / 4e-29 AT1G32070 324 / 2e-109 nuclear shuttle interacting (.1.2.3) Lus10035604 [exp] 111 / 1e-28 AT1G32070 322 / 8e-109 nuclear shuttle interacting (.1.2.3) Lus10028990 [exp] 58 / 4e-10 AT4G19985 204 / 1e-65 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10014202 [exp] 42 / 5e-05 AT5G15770 206 / 2e-69 glucose-6-phosphate acetyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G113600 [exp] 257 / 4e-88 AT1G26220 252 / 3e-86 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.016G140000 [exp] 106 / 2e-28 AT1G32070 287 / 3e-98 nuclear shuttle interacting (.1.2.3) Potri.018G086400 [exp] 43 / 3e-05 AT5G15770 219 / 9e-74 glucose-6-phosphate acetyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10029099 pacid=23151863 polypeptide=Lus10029099 locus=Lus10029099.g ID=Lus10029099.BGIv1.0 annot-version=v1.0 ATGATCCTACGTGGCATCACCTCCTCCGCCACCGCCGCATATCCTTCCTTCCGAATCGCCGCCGCCGCACCTTCATCCCAAATCCCACCACAACAATCTC TCTCCGTCAAACCCACCAACAAATCATACACAATCTCCGACCAGGACCTGGAGTCCCGCGGGTTCCACCTTCGCCGCACAGCCGCCGACCTCAACCTCGA ACAGCTCAACAAAGTGTTCGTCGCCGTGGGGTTCCCGAGGCGGGACCCGGAGAAGATCAGAATCGCGCTGGACCACACCAGCTCTTTACTTTGGGTCCAG GACGAGCGGAGCGGGAAGCCCGTGGCGTTCGCGAGGGCCACCGGCGACGGAGTTTTCAACGCCATCATATGGGACGTGGTGGTGGACCCGTCGTTCCAGG GGATCGGGCTGGGGAAAGCGGTGGTGGAGAGGCTGGTGGATGAGCTTCTGGAGATGGGAATTGTCAACATTGCCCTCTACTCGGAGCCCCGGGTTCTCGG GTTTTACCGCCCGCTTGGGTTCGTTTCCGACCCGGACGGGATCCGTGGGATGGTCTACTCCACTAAGAGAAAGAAGTGA
AA sequence Show only first row Show all	>Lus10029099 pacid=23151863 polypeptide=Lus10029099 locus=Lus10029099.g ID=Lus10029099.BGIv1.0 annot-version=v1.0 MILRGITSSATAAYPSFRIAAAAPSSQIPPQQSLSVKPTNKSYTISDQDLESRGFHLRRTAADLNLEQLNKVFVAVGFPRRDPEKIRIALDHTSSLLWVQ DERSGKPVAFARATGDGVFNAIIWDVVVDPSFQGIGLGKAVVERLVDELLEMGIVNIALYSEPRVLGFYRPLGFVSDPDGIRGMVYSTKRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10029099 [exp]	0	1
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10013061 [exp]	1.0	0.9646
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	2.4	0.9337
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10042673 [exp]	2.8	0.9084
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	10.0	0.9048
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	10.1	0.9243
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10013778 [exp]	13.4	0.8849
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	14.9	0.8827
AT3G04550			unknown protein		Lus10042554 [exp]	15.7	0.8529
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	19.1	0.9044
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	20.0	0.8265

Compare expression of checked genes

Lus10029099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.