Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 160 / 2e-44 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G48000 92 / 3e-20 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G55940 89 / 9e-19 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT1G19630 78 / 1e-15 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G13730 74 / 4e-14 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 73 / 6e-14 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G44970 72 / 2e-13 Cytochrome P450 superfamily protein (.1) AT4G15300 66 / 2e-11 CYP702A2 "cytochrome P450, family 702, subfamily A, polypeptide 2", cytochrome P450, family 702, subfamily A, polypeptide 2 (.1) AT3G30180 65 / 2e-11 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT1G78490 65 / 2e-11 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013060 [exp] 176 / 4e-51 AT3G44970 148 / 5e-40 Cytochrome P450 superfamily protein (.1) Lus10024495 [exp] 177 / 1e-50 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028628 [exp] 161 / 5e-45 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042788 [exp] 141 / 2e-37 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10017839 [exp] 117 / 3e-29 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 114 / 1e-27 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10024016 [exp] 83 / 5e-17 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10000647 [exp] 81 / 2e-16 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10003650 [exp] 79 / 8e-16 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G270404 [exp] 184 / 2e-53 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 184 / 3e-53 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 183 / 4e-53 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G204100 [exp] 183 / 5e-53 AT1G12740 468 / 9e-163 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 182 / 9e-53 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064900 [exp] 181 / 4e-52 AT1G12740 477 / 5e-166 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 180 / 4e-52 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 180 / 5e-52 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 177 / 9e-51 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270300 [exp] 174 / 7e-50 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10029100 pacid=23151790 polypeptide=Lus10029100 locus=Lus10029100.g ID=Lus10029100.BGIv1.0 annot-version=v1.0 ATGGTGGCAAACTACCTCCAGGGTCCATGGGTTTTCCTCTCATTGGTGAAACAATCCAGTTCTTTCTTCCAAGCAACTCCATTGACAGCACTGCCTTCAT CAAGGCCAGGGTTCAAAAACAGAAAGTTGGTGGAGAGATGGCGACGGAGCAACGATACAATAAGTCAGGTTCTTAGCCAGGATGCGAAGTCGAAAACCTC AGTTTTCCACACTCACAAACTCTTGAGGCAACCGATTTTGGGCCGGTTCGGATACGAACCGTTCAAGAATGGCATGTTGATGGCCGAGTTAGAAGAGACC GTATCAACCAGCTTGCACCGTTGGTCTCAGCTTCCACAAGTGGAGCTCAAAACTGCAACCTCCATGATGGTACTTAATTTCATGGCGAGGAAGTTGCTCA GCTATGAACCGGCTCGAGTTTCAGGGAGCGAAGAACTAGCCAATGGCTTTGCCAAGTTCTTCGAAGAATTCTTAAAATTCCCGATAAACATCCCCGACAT CACATCCTTCCGTCGATGTTTTAAGGTTCAGAAGAGGCTAAAGGCAAACATAGGTGACATTGTGGAGAGTAGAAAGAGATCTCCAAGAGAGAAGAGAGAA GATTATCTCGACGACATTCTTGCAGCGATGCAGAACGAAGACTTAGTCTTGACCGATGCCATCCTCGTTACAGCAATGTTCGAAAATGAAGAAATTCTAA AAATTCGGACGGGCCCAAACTGTGGGCTCTCATGGGAAGAATACAAGTCCATGACTCGTCAAGTGATTAAAACATCCTTAATAATGTCGAGTGTTGCACC TGGAATTCTGAGGAAGGCACTCACAGATATTGATGTAGATGGTAAGTCGAAGAAACTAGAACGGATTTCTGTTATTTTGAAACTGGAGGAAACTATGTGC GGTGGTCTAAGTTCACCCACCTCACATTTCAAGCTGGTTTCCTCGGGCATGAGTGAGAGGGACTTTGCACAGAAGTTCATAGCATTTGGTGGAGGTGCAA GATCATGTTCGGGATCTGAGTTAACTAAGGCTCTAATGGCCTTATTCCTTCACGTTCTCATCACAAATTACAGTTGGAAGAACATCAGGGCCGGAAAGAT AGCTCGAACTCCGGTTCTGGGATTCAGAGACGGCTTGCATGTCCAATTCCAAGCATTATCAGCACAAGCTTGA
AA sequence Show only first row Show all	>Lus10029100 pacid=23151790 polypeptide=Lus10029100 locus=Lus10029100.g ID=Lus10029100.BGIv1.0 annot-version=v1.0 MVANYLQGPWVFLSLVKQSSSFFQATPLTALPSSRPGFKNRKLVERWRRSNDTISQVLSQDAKSKTSVFHTHKLLRQPILGRFGYEPFKNGMLMAELEET VSTSLHRWSQLPQVELKTATSMMVLNFMARKLLSYEPARVSGSEELANGFAKFFEEFLKFPINIPDITSFRRCFKVQKRLKANIGDIVESRKRSPREKRE DYLDDILAAMQNEDLVLTDAILVTAMFENEEILKIRTGPNCGLSWEEYKSMTRQVIKTSLIMSSVAPGILRKALTDIDVDGKSKKLERISVILKLEETMC GGLSSPTSHFKLVSSGMSERDFAQKFIAFGGGARSCSGSELTKALMALFLHVLITNYSWKNIRAGKIARTPVLGFRDGLHVQFQALSAQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	4.9	0.8867
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10019971 [exp]	4.9	0.8748
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	5.0	0.8981
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	5.1	0.9169
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	6.3	0.9162
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	7.3	0.8706
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	8.8	0.9107
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	11.0	0.8947
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	11.5	0.8775
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10030698 [exp]	13.9	0.7961

Compare expression of checked genes

Lus10029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.