Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30530 144 / 1e-43 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G13600 137 / 9e-41 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G04038 129 / 1e-37 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT5G38800 127 / 3e-37 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G15830 115 / 4e-32 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G68880 92 / 8e-24 bZIP ATBZIP basic leucine-zipper 8 (.1) AT5G60830 74 / 3e-16 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT2G18160 72 / 7e-16 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT1G75390 69 / 8e-15 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT3G62420 66 / 2e-13 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013059 [exp] 318 / 2e-111 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 83 / 3e-19 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 73 / 3e-16 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10024279 [exp] 69 / 2e-14 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 69 / 2e-14 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10007726 [exp] 67 / 6e-14 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10019273 [exp] 68 / 9e-14 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10041780 [exp] 67 / 1e-13 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 66 / 1e-13 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106700 [exp] 167 / 2e-52 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 167 / 3e-52 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.004G111100 [exp] 163 / 1e-50 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.010G135200 [exp] 163 / 3e-50 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.015G047700 [exp] 86 / 1e-20 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.007G006900 [exp] 81 / 2e-18 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G158200 [exp] 79 / 3e-18 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.014G007100 [exp] 79 / 3e-18 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.009G119700 [exp] 76 / 2e-17 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.014G013400 [exp] 76 / 3e-17 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10029101 pacid=23151650 polypeptide=Lus10029101 locus=Lus10029101.g ID=Lus10029101.BGIv1.0 annot-version=v1.0 ATGTTGTCATCCGGAGACCATCAATTCACTGGAGGACTCCATTTCCTCCCTCACGAACAGTCGTTCATGCCAGACTATTTTCCTCCTCCTCACACATCTG TCTCAGCAGCCAGATTCCTCCAGGCCGCCACAGGGACAGACACGTTCCCTATGAACATGCACAACATGAGCATCCACGACTACATAATCAACCCTCCCGC CAACCAAAACTATAATAACAACTACTCACCGTCCTCTCTATCCTCATCGACCTCGGACGAGGCCGACGAGCAACAGATGAAGATAATTGATGAGAGGAAG CAGAGGAGGATGATATCGAACAGGGAGTCGGCCAGGAGGTCGAGGATGAGGAAGCAGAAGCACCTCGACGAGCTGTGGTCCCAGGTCGTCCGCCTCCGAA ACGAGAACCACAGCCTGCTCGATCGGTTGAACCACTTGTCCGAGTCCCACGACCGGGTCGTTGAGGAGAATGCCCGGCTCAAGGAGGAGTCCTCCGGGCT GAGGCAGCTGTTGACCGACCTGCCGATCGGGAGTCCCTACAGTAATGAATCGGCGGCGATGGCGTTAAGGGAGCTGGACGACGTCGTTAGAGCTGATCAT CACCAGTCTTCCTCTAACGATAGTTCCATTGCCAGTTCTGTAGACTTGCTTCTTTGA
AA sequence Show only first row Show all	>Lus10029101 pacid=23151650 polypeptide=Lus10029101 locus=Lus10029101.g ID=Lus10029101.BGIv1.0 annot-version=v1.0 MLSSGDHQFTGGLHFLPHEQSFMPDYFPPPHTSVSAARFLQAATGTDTFPMNMHNMSIHDYIINPPANQNYNNNYSPSSLSSSTSDEADEQQMKIIDERK QRRMISNRESARRSRMRKQKHLDELWSQVVRLRNENHSLLDRLNHLSESHDRVVEENARLKEESSGLRQLLTDLPIGSPYSNESAAMALRELDDVVRADH HQSSSNDSSIASSVDLLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	0	1
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	1.4	0.7622
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	6.8	0.6953
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	12.3	0.6297
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	13.4	0.5600
AT5G14940			Major facilitator superfamily ...		Lus10005603 [exp]	27.9	0.6029
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	127.7	0.5137
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	166.1	0.4933
AT2G32280			Protein of unknown function (D...		Lus10018495 [exp]	188.5	0.4801

Compare expression of checked genes

Lus10029101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.