Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30520 770 / 0 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 385 / 8e-127 Phototropic-responsive NPH3 family protein (.1) AT5G48800 352 / 8e-114 Phototropic-responsive NPH3 family protein (.1) AT1G30440 315 / 3e-99 Phototropic-responsive NPH3 family protein (.1) AT2G47860 304 / 4e-95 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT1G03010 302 / 2e-94 Phototropic-responsive NPH3 family protein (.1) AT5G03250 298 / 4e-93 Phototropic-responsive NPH3 family protein (.1) AT5G13600 296 / 1e-92 Phototropic-responsive NPH3 family protein (.1) AT3G08570 294 / 2e-91 Phototropic-responsive NPH3 family protein (.1) AT5G64330 294 / 2e-90 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013057 [exp] 1099 / 0 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10025928 [exp] 362 / 6e-118 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 323 / 4e-102 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 315 / 5e-99 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 312 / 4e-98 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 312 / 5e-98 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 306 / 2e-95 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 304 / 2e-95 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 305 / 3e-95 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159000 [exp] 839 / 0 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.019G131600 [exp] 807 / 0 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G053200 [exp] 412 / 2e-137 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 372 / 9e-122 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 333 / 2e-106 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 319 / 3e-101 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 316 / 2e-99 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 311 / 8e-98 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 310 / 1e-97 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 309 / 1e-96 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10029102 pacid=23151778 polypeptide=Lus10029102 locus=Lus10029102.g ID=Lus10029102.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTGTCAGAACCAACAGCAGAGTCTCCCTCGCCATGGAAAGAACCGGCCAATGGATCTTCTCTCAGGAAATCCCGACGGACGTCCTGATCG ACGTCGGCGAGGCCAACTTCTCCCTCCACAAGTTCATGCTGGTGGCCAAGAGCAACTACATAAGAAATCTCATCATCGACTCCAAAGAAGCCGACCTCAC CAGAATCGACCTCTCCGACATCCCCGGCGGCCCCGAAGTCTTCGAAAAGGCTGCCAAGTTCTGCTACGGCGTCAACTTCGAGATCACCGTCCACAACGTT GCCGCTCTGCGATGCGCCGCCGAGTATCTCCAGATGACCGACGCCTACTGCGACGGCAACCTCGCCACCCGGACCGACGACTTCCTCTCTCAGGTCGCCC TCTCCAGCCTCTCCGGCGCCGTCGTCGTGCTCAAGTCCTGCGAAGATCTGCTCCCCCTGGCTAAGGATCTGAAGATCGTCCAGCGTTGTGTTGAAGTTAT CAGCGTCAAGGCTTGCAACGAGGTGAATTTTCCAACGAGGTCGCCGCCGAACTGGTGGACGGATGAGCTGTCGATTCTCGACATCGAATCCATCTCGAGA ATAATCCCGGCGATGAAGCTACGAGGGGCAAAGCCGATGACTTTAGCAAGCTTACTGGTGACATACACGGAGAGAAACCTCAGGGACCTCGTTCGAGACC ATTCGGGTACCGGGTCGAAATCGTTCAACCAGGATTTCCCTGATCACGATTCGGAGCTCCGAGCCCATCAAAGAGAGCTTCTTCAATCCATAGTCTCATT ACTCCCCTCCGAGAAAGCTGCTTTCCCTGTTCATTTCCTCTGCTGCCTCCTCCGATCAGCAATCTTTCTCAAGGCATCCATTGCCTGTAAGAACGAGCTG GAGAAGCGGGTGGCGGCCATTCTCGAGCATGTGACGGTGGATGATCTGCTGGTGTTGTCTTTCACCTACGACGGAGAGAGGCTGTTTGAGCTGGAGAGTG TGAGGAGGATTGTTTCATGGTATGTGGATAAGGAGAAGAACGTGGGGATATTCAATGGTGGTGGGGATTTTAAAGAGTCGTATTCGACTGGTATGCAGAG AGTTGCCAAGACTGTGGATGCTTACCTTGGAGAGATCGCACCTCATGCTGAACTTACGATTGCTAAGTTCAATGGGATTGCTGTTCTTGTTCCTAAAGCT GCCAGAAAGGTTGACGATGACCTCTACCGTGCCATTGACATCTACCTCAAGGCACATCCGGACCTTGACGAGATAGAGAGGGAGAAAGTGTGCAGCGTGA TGGACCCATTAAAGCTAACATACGAAGCTCGACTCCACGCTTCCCAGAACAAACGGCTACCAGTCCAAATCGTCCTCCACGCTCTCTACTTTGACCAGCT ACAGCTGCGGAGCGGAGCCACCACTACAGATCAGAGCCGCTCATGTACGCCGCTGATGGCCTCAGCCACGGCGACGAAGAATCAGTTACAGACGGATCTG ACACTGGTGAGAGAGAATGAGGCCTTGAGGGCAGAGCTAATGAAGATGAAGATGTTCATCACTGATATCCAGAAGAGCGGCAGTCATGGAGGGAAGTCTG CTGCAAGTTCCAGCAGCAAGAAAGGGACTTTCTTCTCGTCTATGTCCAGAACTCTTGGAAAGCTGAATCCTTTCAAACACGGGTCGAAAGATACTTCGAA CATCGTTGATGATGGTGGGATCGACATTACCAAGCCTAGGAAGAGAAGGTTTTCGATTTCGTAA
AA sequence Show only first row Show all	>Lus10029102 pacid=23151778 polypeptide=Lus10029102 locus=Lus10029102.g ID=Lus10029102.BGIv1.0 annot-version=v1.0 MASPVRTNSRVSLAMERTGQWIFSQEIPTDVLIDVGEANFSLHKFMLVAKSNYIRNLIIDSKEADLTRIDLSDIPGGPEVFEKAAKFCYGVNFEITVHNV AALRCAAEYLQMTDAYCDGNLATRTDDFLSQVALSSLSGAVVVLKSCEDLLPLAKDLKIVQRCVEVISVKACNEVNFPTRSPPNWWTDELSILDIESISR IIPAMKLRGAKPMTLASLLVTYTERNLRDLVRDHSGTGSKSFNQDFPDHDSELRAHQRELLQSIVSLLPSEKAAFPVHFLCCLLRSAIFLKASIACKNEL EKRVAAILEHVTVDDLLVLSFTYDGERLFELESVRRIVSWYVDKEKNVGIFNGGGDFKESYSTGMQRVAKTVDAYLGEIAPHAELTIAKFNGIAVLVPKA ARKVDDDLYRAIDIYLKAHPDLDEIEREKVCSVMDPLKLTYEARLHASQNKRLPVQIVLHALYFDQLQLRSGATTTDQSRSCTPLMASATATKNQLQTDL TLVRENEALRAELMKMKMFITDIQKSGSHGGKSAASSSSKKGTFFSSMSRTLGKLNPFKHGSKDTSNIVDDGGIDITKPRKRRFSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	2.2	0.7939
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	4.7	0.7770
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10026001 [exp]	4.8	0.6963
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	6.5	0.7454
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	6.9	0.7628
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	9.7	0.7567
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10028921 [exp]	11.3	0.7582
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011816 [exp]	20.2	0.7259
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	20.2	0.7466
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	20.4	0.7428

Compare expression of checked genes

Lus10029102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.