Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 597 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 595 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 581 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 528 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 525 / 0 HSP70B heat shock protein 70B (.1) AT5G02500 523 / 7e-180 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 512 / 7e-176 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 509 / 1e-174 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 503 / 1e-172 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 404 / 3e-133 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022375 [exp] 659 / 0 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 649 / 0 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 646 / 0 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 601 / 0 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023043 [exp] 590 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017306 [exp] 581 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 565 / 0 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 551 / 0 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10002319 [exp] 534 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 605 / 0 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 592 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 590 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 588 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 533 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 526 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 523 / 4e-180 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 523 / 6e-180 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 522 / 1e-179 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 519 / 2e-178 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10029103 pacid=23151831 polypeptide=Lus10029103 locus=Lus10029103.g ID=Lus10029103.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGAGTGGAAATGCGATGAAGGCAGGAAAAGTGGTGATCGGGATAGATCTTGGGACGACATTCTCCTGCGTAGCCGTCGCGAAAGACGGTG GGATAGAGATCATTGCCAACGACCAAGGAAACCGAACCACTCCTTCGTTTGTGGCCTTCTCTGGAGCTGATCAAGACTATGAGCGTCTCATTGGAGAACC CGCTAAGAATCAGGCCACTCTCAACCCTGGACGCACCTTCTTCGATGTCAAACGGCTCATTGGTAAGAAATTCCACGACCCAGAAGTCGTGAACGACATC AAGTACCTGCCGTATCATATTGTCAACAGAGCAGGGAAGCCGTATGTACAAGTCAAAGACGGTTCGGGAGATTTGAAGGAGTTCAGTGCAGAAGAGATTA GTGCTATGGTGCTTGGAAAAATGAAGGAGGCAGCTGAATCATATATAGGAAAGGCTGTGGATGGAGCTGTATTGACTGTGCCGGCTTACTTCAATGACGC TCAACGACAGGCGACCAAGGATGCCGGAATCATTGCTGGGTTGAATGTGCTAAGGATAATCAACGAACCTACTGCAGCCGCATTAGCTTATGGATGGAAG GGTGATTGGAATGGTAAAAGGAAGATTCTTGTGTATGATTTGGGCGGCGGGACGTTTGATGTAAGCATTATGGAGATTGAAGGTGGTGTGTTCACTGTCT TAGCAACTGGGGATGTAAGAGGGGATAGTAAGGCTATTGGGAGGTTACGGAGGGAATGTGAGAGGGCGAAGAGGTCACTTAGCGGCCAGATGATGCAAGT GAGGGTTAACATCGATTGCTTTGTTAATGGAATTGATTTCTCTGAAGTATTGACCAGGGTGAAATTCGAAGAGTTGAACTTGGATTTGTTTGAGAAGACG ATGAATGATGTGAAGGGTACTATGAAAGATGCAGAGGTGGAGAAGAGCGAAATCGATGATATTTTGCTGGTTGGAGGAAGTTCTAGGATTCCTAAGGTAA GGCAGATGTTGAGAGACATGTTTAATGGGAAGGAGCCTAGCAAAGGAGTGAACCCTGATGAAGCTGTGGCTTATGATGTCACTTTACGTGATGTAACTCC GTTGAGTTTGGGAACCGATAACATGGGGGATTTGATGGCGGTAATTGTCCCAAAGAATACTCCTATTCCCACCAAAATGTCGAGCATTTTCTGCACTGCA GCGGACCAGCAGACCTGTGTGCCTGTCAAGGTATATCAAGGTGAAAGACCCATGATCCAAAGTTGCATCGAGCTTGGAGGATTTGATCTCTCCAATATCA CTCCAGCTCCAAGTGGCGTCACAGAAATAGATGTGACATTTGAGATTGATGAGGATGGAATATTAACGGTCACTGCAAAGGAAGAGAACGATTCTGCAAT ATCCAAGTCTATTACCATCAATAGCTACAAAGGTAATTTAACCAAAGCAGAAATTGAAACGATGATAAGTACTGCGAAGAAGATGTCGCGGCAAGACAAG AAAGCCAAGGCTCGTGCTCAAGCTAGGAACCAGCTGGAGGGGTTAATCTATGATGTCAAGAAAGCTATAAGCAGAGGAGACAGTAGCAGCTGTTTTACTT CGGTTGACAAGAGAACGATCAAGAGTGAACTTGAAGAAGCTTCACTTTGGCTGGATGGGAACCTGCACTCTACCGAGGAGTATGAGAAGAAACTGAAAGC AATCCGAGATAGAGTAGCAGCTTTGCATTTAAGTCTGTGA
AA sequence Show only first row Show all	>Lus10029103 pacid=23151831 polypeptide=Lus10029103 locus=Lus10029103.g ID=Lus10029103.BGIv1.0 annot-version=v1.0 MAEESGNAMKAGKVVIGIDLGTTFSCVAVAKDGGIEIIANDQGNRTTPSFVAFSGADQDYERLIGEPAKNQATLNPGRTFFDVKRLIGKKFHDPEVVNDI KYLPYHIVNRAGKPYVQVKDGSGDLKEFSAEEISAMVLGKMKEAAESYIGKAVDGAVLTVPAYFNDAQRQATKDAGIIAGLNVLRIINEPTAAALAYGWK GDWNGKRKILVYDLGGGTFDVSIMEIEGGVFTVLATGDVRGDSKAIGRLRRECERAKRSLSGQMMQVRVNIDCFVNGIDFSEVLTRVKFEELNLDLFEKT MNDVKGTMKDAEVEKSEIDDILLVGGSSRIPKVRQMLRDMFNGKEPSKGVNPDEAVAYDVTLRDVTPLSLGTDNMGDLMAVIVPKNTPIPTKMSSIFCTA ADQQTCVPVKVYQGERPMIQSCIELGGFDLSNITPAPSGVTEIDVTFEIDEDGILTVTAKEENDSAISKSITINSYKGNLTKAEIETMISTAKKMSRQDK KAKARAQARNQLEGLIYDVKKAISRGDSSSCFTSVDKRTIKSELEEASLWLDGNLHSTEEYEKKLKAIRDRVAALHLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10029103 [exp]	0	1
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	12.0	0.8287
					Lus10024863 [exp]	13.2	0.8055
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	14.0	0.8874
AT5G03050			unknown protein		Lus10012904 [exp]	20.7	0.7867
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	21.6	0.8855
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	22.6	0.8854
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	31.2	0.8809
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	34.1	0.8790
AT1G54215			proline-rich family protein (....		Lus10037669 [exp]	38.3	0.8782
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	41.5	0.7565

Compare expression of checked genes

Lus10029103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.