Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22720 352 / 4e-123 Actin-like ATPase superfamily protein (.1.2) AT2G45270 79 / 4e-17 GCP1 glycoprotease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013054 [exp] 385 / 1e-138 AT4G22720 352 / 6e-123 Actin-like ATPase superfamily protein (.1.2) Lus10000791 [exp] 72 / 7e-15 AT2G45270 664 / 0.0 glycoprotease 1 (.1) Lus10030285 [exp] 67 / 6e-13 AT2G45270 550 / 0.0 glycoprotease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029200 [exp] 353 / 1e-123 AT4G22720 652 / 0.0 Actin-like ATPase superfamily protein (.1.2) Potri.007G129400 [exp] 230 / 3e-78 AT4G22720 240 / 4e-80 Actin-like ATPase superfamily protein (.1.2) Potri.014G067800 [exp] 71 / 2e-14 AT2G45270 655 / 0.0 glycoprotease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00814 [flax] [poplar] TsaD tRNA N6-adenosine threonylcarbamoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029108 pacid=23151775 polypeptide=Lus10029108 locus=Lus10029108.g ID=Lus10029108.BGIv1.0 annot-version=v1.0 ATGAAGAAACTGATCGCTATAGGGTTCGAAGGCTCGGCGAACAAGATCGGAGTCGGAGTCGTCGCGCTAGACGGAACAATCCTCTCCAACCCACGGCACA CTTATATCACTCCCCCAGGCCATGGCTTCCTCCCTCGAGAAACCGCTCACCACCATCTCCGCCACGTGCTGCCCCTCGTCCAGTCAGCGCTCGACGCCGC TGGACTGAATCCCGACGATGTCGATTGCATCTGCTACACTAAAGGCCCCGGGATGGGCGCGCCGCTGCAGGTCTCCGCCATCGTCGTTCGTGTCCTTTCC CTGCTCTGGAAGAAACCGATTGTCGCCGTCAACCACTGCGTCGCTCATATCGAAATGGGCCGGGTCGTCACCGGTGCACATGACCCGGTTGTGCTCTACG TTAGCGGCGGGAACACTCAGGTGATTGCTTATAGTGAAGGCAAGTATCGGATTTTCGGGGAGACTATTGATATCGCTGTGGGGAATTGTTTGGATCGGTT CGCTAGGGTCTTGCAGCTTTCCAATGATCCTGCTCCTGGCTACAACATTGAGCAGGTGATTGATTATGGGGTATTTGGATTGAATTGA
AA sequence Show only first row Show all	>Lus10029108 pacid=23151775 polypeptide=Lus10029108 locus=Lus10029108.g ID=Lus10029108.BGIv1.0 annot-version=v1.0 MKKLIAIGFEGSANKIGVGVVALDGTILSNPRHTYITPPGHGFLPRETAHHHLRHVLPLVQSALDAAGLNPDDVDCICYTKGPGMGAPLQVSAIVVRVLS LLWKKPIVAVNHCVAHIEMGRVVTGAHDPVVLYVSGGNTQVIAYSEGKYRIFGETIDIAVGNCLDRFARVLQLSNDPAPGYNIEQVIDYGVFGLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22720			Actin-like ATPase superfamily ...		Lus10029108 [exp]	0	1
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	3.5	0.7933
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	3.9	0.7930
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	9.4	0.7980
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	12.3	0.7875
AT2G35790			unknown protein		Lus10023498 [exp]	17.9	0.7622
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	19.1	0.7720
AT3G18310			unknown protein		Lus10025089 [exp]	19.4	0.7566
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	22.4	0.6893
AT1G53900			Eukaryotic translation initiat...		Lus10037452 [exp]	22.8	0.7260
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	25.3	0.7636

Compare expression of checked genes

Lus10029108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.