Plant FIBer expression Database

Lus10029109 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68910 437 / 5e-147 WIT2 WPP domain-interacting protein 2 (.1.2.3)
AT5G11390 278 / 2e-84 WIT1 WPP domain-interacting protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013053
[exp]
1014 / 0 AT1G68910 485 / 5e-166 WPP domain-interacting protein 2 (.1.2.3)
Lus10034351
[exp]
276 / 6e-84 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1)
Lus10005102
[exp]
223 / 3e-66 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1)
Lus10005101
[exp]
66 / 4e-12 AT5G11390 91 / 2e-21 WPP domain-interacting protein 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G135900
[exp]
544 / 0 AT1G68910 473 / 8e-161 WPP domain-interacting protein 2 (.1.2.3)
Potri.017G106400
[exp]
341 / 2e-108 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1)
PFAM info
Representative CDS sequence
>Lus10029109 pacid=23151645 polypeptide=Lus10029109 locus=Lus10029109.g ID=Lus10029109.BGIv1.0 annot-version=v1.0
ATGGAACACTATGCTGTTGACGAAGAATTCAAGACGACGATTGAAGTAAATGAGCCAACCGGAACATCATCAATTCCTGTCATGGACACCTTAGCCAAAG
TGGATTCGGACTTGAATCTCTCGTCCGAGAAATTAGGAACCTTGCATGAAATTTTAATGCATCTGCTTGCTTGGGACAACGATCGCGAGGCGATAGCTGC
ATACAGCTACATCTCAGCAACTTCGATAGAGAAGGCGTTGGAACTCGATCTCCTCTCCGGAATCTTGGATTCTGAGGTTAAGGAGGTGGAGAGTTTCATG
GACTGCATCCAAGCGGAGTTAGTCAATGCTCGTTATGAAATATCTACGAGCAGAGAATCACCACCAAATGCATCGAGCAGGATAGAAGAGCGGTTGCTTG
ATTCCGAAGAATCATTCAAGAAAGCTCAAGATCAAGTTCTGGATGTGAAGATGAAATCGACGAAATTACAGCGAGCCTTCTTAGCTCTCCGACATGAGAA
CTTGGAGGATGCTAAGGCAATTGCATTGTCGCTCACTGGCAATAACGTCGAGGCGAATTCAAAGAAGCAGACTGTCGAGCAGCACAGACACGTCCTGCGG
ATGCTAGACAAGTCGCTTGCAAGGGAGCTAGAACTCGAGAAGAAGCTCTCCGAGTCGAAGCAGAGCGAAGAGCAGATGAAGCTGAAGCTACATTACACAG
AACAAGTTGTGTTTCGGATGGAAGAAGCGGGAGAAGTCGTATTGGGAAGATTCTTGGAAGCAGAAAATGCTGCGGAAGTGTTCATGGGAATTTCGAAGGA
GTTATTAGGGCGGCATCAGATCGTTCAGTTCAACTTGAACGGTTCGTTCCAGCGAGAATCCGAGTTAAGATCAAAGCTTCAAGATTGCATCTTGAAGCTA
GATGCTAAGGATGCTACTTTGGGAAAACTCGAGATCAGCCTTGCAGAATATGTTGCCAAATGTAACGAACTGCCCGAGTTGAAAGACCGAGTGAAGTCAC
TCGAAGAACAGGTGAGGAAAGCCGAGTCAAGTCTCAAGACTGCAAAATCTGTACATGAAGCTGACCAAGAACAGCTCGTCGAAATGGATAATCTAGTCGA
GTCGCTAAGGGAGAACATCTTCGAAGCGGAGACCAGGGCCGAGAATGCTGAGACTAAAGTTAGTCAGTTGACCGATACGAATGTCGAACTCTCTGAAGAA
ATCAACTTTCTCAAGAGTGGGAGAGATAGCGATGCAAAGAAGGTAAGCTCGCTCGAGAAGCAGTTGATGGAACTCGAAATCCAAGCGCAGCATTCGAAAG
TGTCGTCCGAAGCGAGTCAAGAGCAGCAAAACATGCTGTATTCTGCTATTTGGGATATGGAGACGTTGATTGAAGATCTTAAATCGAAGGTCTCCAAGGC
CGAAAGCAAGCTCGAGAATTCCGAGGAGCAATGTATTGTGCTGTCCGAAACGAATGCTGACCTTAACAACGAGATAAGCTTGTTAAGGACTAGGATTCGG
ACGTTGGAAAAGTCGTTGGATCGGGCTAACAACTCGAGAGCTGAAAGTGCAGAAGATATCAAGACGAGGACCAAGATCGTCATGGATATGGTGTTTCAAC
TCGCCAAAGAACGAGAACGAATCCAGGATCAGCTGCTTTCTCTTGGAAAGGAGAATGAAACATTGAAGGCAAAGCTGAGTTTGATGCAAAAGTACGATTT
CCTCAACTCTTGGAGTGGAGACGATCTCGGTCCAATCTTTTCCTCAAACGACTTGTCGAAGGAGACGACTACGAATTGA
AA sequence
>Lus10029109 pacid=23151645 polypeptide=Lus10029109 locus=Lus10029109.g ID=Lus10029109.BGIv1.0 annot-version=v1.0
MEHYAVDEEFKTTIEVNEPTGTSSIPVMDTLAKVDSDLNLSSEKLGTLHEILMHLLAWDNDREAIAAYSYISATSIEKALELDLLSGILDSEVKEVESFM
DCIQAELVNARYEISTSRESPPNASSRIEERLLDSEESFKKAQDQVLDVKMKSTKLQRAFLALRHENLEDAKAIALSLTGNNVEANSKKQTVEQHRHVLR
MLDKSLARELELEKKLSESKQSEEQMKLKLHYTEQVVFRMEEAGEVVLGRFLEAENAAEVFMGISKELLGRHQIVQFNLNGSFQRESELRSKLQDCILKL
DAKDATLGKLEISLAEYVAKCNELPELKDRVKSLEEQVRKAESSLKTAKSVHEADQEQLVEMDNLVESLRENIFEAETRAENAETKVSQLTDTNVELSEE
INFLKSGRDSDAKKVSSLEKQLMELEIQAQHSKVSSEASQEQQNMLYSAIWDMETLIEDLKSKVSKAESKLENSEEQCIVLSETNADLNNEISLLRTRIR
TLEKSLDRANNSRAESAEDIKTRTKIVMDMVFQLAKERERIQDQLLSLGKENETLKAKLSLMQKYDFLNSWSGDDLGPIFSSNDLSKETTTN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G68910 WIT2 WPP domain-interacting protein... Lus10029109
[exp]
0 1
AT2G36310 NSH1, URH1 nucleoside hydrolase 1, uridin... Lus10035601
[exp]
1.4 0.8907
AT3G55360 ECR, CER10, ATT... ENOYL-COA REDUCTASE, ECERIFERU... Lus10001695
[exp]
3.9 0.8681
AT1G69780 HD ATHB13 Homeobox-leucine zipper protei... Lus10036730
[exp]
5.2 0.8480
AT2G36270 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1,... Lus10017049
[exp]
5.3 0.8820
AT4G09890 Protein of unknown function (D... Lus10005802
[exp]
5.9 0.8570
AT3G61260 Remorin family protein (.1) Lus10014785
[exp]
6.0 0.8726
AT4G25330 unknown protein Lus10006358
[exp]
6.9 0.8531
AT1G31360 MED34, ATRECQ2,... ARABIDOPSIS THALIANA RECQ 2, ... Lus10033289
[exp]
10.4 0.8379
AT3G66654 Cyclophilin-like peptidyl-prol... Lus10016265
[exp]
10.4 0.8204
AT4G32000 Protein kinase superfamily pro... Lus10001939
[exp]
14.3 0.7982

Lus10029109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.