Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68920 320 / 4e-104 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 228 / 9e-70 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 199 / 4e-58 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 190 / 2e-54 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 183 / 5e-53 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 174 / 1e-49 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 168 / 8e-48 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT2G18300 161 / 4e-45 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G59640 158 / 1e-44 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 158 / 1e-44 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013052 [exp] 916 / 0 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030908 [exp] 620 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 612 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012484 [exp] 177 / 6e-51 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006491 [exp] 176 / 3e-50 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002337 [exp] 175 / 3e-49 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003172 [exp] 170 / 2e-48 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030807 [exp] 166 / 2e-47 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10013284 [exp] 165 / 2e-47 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136100 [exp] 551 / 0 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 498 / 2e-172 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 228 / 7e-68 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 205 / 2e-59 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 203 / 1e-58 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 186 / 8e-54 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 182 / 2e-52 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G117300 [exp] 174 / 9e-49 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.004G156000 [exp] 173 / 2e-48 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.012G072700 [exp] 165 / 3e-47 AT5G62610 228 / 4e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029110 pacid=23151795 polypeptide=Lus10029110 locus=Lus10029110.g ID=Lus10029110.BGIv1.0 annot-version=v1.0 ATGGAGATGGACATTAGTGAGAAGGGTAAATCTGATATGGAGAAGAGCAATGGTGACAACAACCCTATGAACTATGAATCATCTGGTGCATTATCTTCTG ACTGGCGATTCGGTAGGAATGCTGCAGCTCTCAGTTTGGTTCCTGGCGATGGTCAAATGACTTCTTGCTCATCTGCCTCTATGGGGGAATCATTTGGTCC TCCTCCTGGTCTTTGGGACCACCAAACTAGTTCACGTAACATAGGGTTTTGTGACATTAATATCCAGAACAGCGGTGGTACAGGGACTCCGGTAGGGATG GTAAGAGGTGGTCCTGCCTCTATGAGTTGGAACCAGCCCAGTTCAATGTTGAGGGATGGTATATTCTTGCCAAATGCTGGAATACTTCCCCCAAGCTTAT CTCAGTTTCCTGCTGATCCTGCTTTCATTGAGCGAGCTGCCAGGTTTTCGTGCTTCAACAGTGTAAACTACGGTGATCATATGGCTCACCCTTTTGGAAT CTCCGAACCTCCTATGGGTCTTTACTCTAGAGCTGGGGGGATGATGCAAGGCCCGCCCCAAGAGGTATTTGTAGGTCCTTCTTTACATATGGATCATGCC AAAATTGAAGGTAGCCCTCTTAAGAGCGAGAGGAAAAGCGAGAGCCTTGTTAGATCTCACGATGAGGTAAAACCGGGTGGTAATAATGACTCCGATGAAG CTGAATTTAGTGGCGGCGGTGGTGGTCAAGATGATACCGCTATGTTGGATGCAAATGGTGGAAAATCGTCTGCTAAGGGCGTCGAGTCCAAGAAAAGGAA AAGGAACGGGCAGGATACAAAGAATGAAGGTACAGATGGTGGCTCTGAATTTCAACAGAAAGTAGGCAAAAATCAAGGTTCAGCAAATCATAAGGCCTCT GGGGAAAATGGCAAACAAGGATCTCCTCCGCCGAAAGAAGATTATATTCATGTCCGAGCTCGGAGAGGACAGGCAACCAATAGCCACAGTCTTGCAGAGA GAGTAAGAAGGGAGAAGATCAGCGAAAGAATGAAGCTTTTGCAGGACCTTGTACCTGGTTGCAACAAGGTGACCGGCAAGGCAGTGATGTTGGATGAAAT TATCAACTATGTGCAATCACTACAGCGCCAGGTGGAGTTTTTGTCGATGAAGCTTGCCACGGTGAATCCAAGGCTGGATTTTAACTTGGAAGGGCTTCTA GCAAAGGACATCCTTTCGAGAGCCGTTCCTTCAGCCGGTCTCTCCTTTTCGCCAGATATGCCTATGTCTTATCAACCTCCTCCATTGCATCCATCTCAAC CGGCCGGTTTTCCTGTAATGGAGAGTCATCATTCTGACATCCTCCGGCGTAGTATCGCTTCTTCGAGCGCAGAATTCAAGGATCCTGCTCAGCAGCTACA CGGCTCGTGGAACGATGAGCTCCACAATGTGATGCAGATGTATGGGAGCAATGTTCCTCAAGGTAGCCAAGAGATTTCGGCAGGCGATATGAAACCTGAA CTTTGA
AA sequence Show only first row Show all	>Lus10029110 pacid=23151795 polypeptide=Lus10029110 locus=Lus10029110.g ID=Lus10029110.BGIv1.0 annot-version=v1.0 MEMDISEKGKSDMEKSNGDNNPMNYESSGALSSDWRFGRNAAALSLVPGDGQMTSCSSASMGESFGPPPGLWDHQTSSRNIGFCDINIQNSGGTGTPVGM VRGGPASMSWNQPSSMLRDGIFLPNAGILPPSLSQFPADPAFIERAARFSCFNSVNYGDHMAHPFGISEPPMGLYSRAGGMMQGPPQEVFVGPSLHMDHA KIEGSPLKSERKSESLVRSHDEVKPGGNNDSDEAEFSGGGGGQDDTAMLDANGGKSSAKGVESKKRKRNGQDTKNEGTDGGSEFQQKVGKNQGSANHKAS GENGKQGSPPPKEDYIHVRARRGQATNSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNLEGLL AKDILSRAVPSAGLSFSPDMPMSYQPPPLHPSQPAGFPVMESHHSDILRRSIASSSAEFKDPAQQLHGSWNDELHNVMQMYGSNVPQGSQEISAGDMKPE L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	0	1
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	2.0	0.8966
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	4.9	0.8988
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	6.0	0.8746
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	8.8	0.8977
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	9.8	0.8664
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	13.9	0.8373
AT3G21710			unknown protein		Lus10039666 [exp]	14.3	0.8927
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	14.7	0.8986
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	16.0	0.8662
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	16.8	0.8917

Compare expression of checked genes

Lus10029110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.