Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013051 [exp] 799 / 0 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1) Lus10030582 [exp] 645 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10030907 [exp] 643 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10014017 [exp] 68 / 9e-13 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10019900 [exp] 56 / 1e-08 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1) Lus10011727 [exp] 46 / 2e-05 AT5G65840 297 / 1e-101 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G113000 [exp] 605 / 0 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1) Potri.010G136300 [exp] 592 / 0 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1) Potri.006G133100 [exp] 64 / 2e-11 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1) Potri.014G012100 [exp] 43 / 0.0002 AT5G65840 321 / 7e-111 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10029111 pacid=23151696 polypeptide=Lus10029111 locus=Lus10029111.g ID=Lus10029111.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTTTCTATGGAGGACTTTGTAGGAAATGGAGTTCTGAAAGGGCTGCTCCCAAAGCTGTTGGAAGAAGGGTGGGATGATGTCCCAACTTTGA AGATCATGACCGATGAGGACATGGATGCAATCAACCTGACAAAGCGACAAAAGGAGGCCCTGGAGATAAGAACATACGTGCACGATCGAGCTCTGATGTA CTACGCAGACAGAGTGGAGGCCTCAGGAAAAAGCTTGCAGGAGCTTCTGGCACTAAGCAGAACAGATGTGGCATCTCTATTCGGGATGAAACGAGGCCAC GCAGCTCGTTTCCTGGACCGAACCACTGCCTGTACAGAACCACTGAGCAAACCTGACGATACTGCTTTCCCAGCCAGGAAATCCCATCGTCCTGAACCAT CCAGAAGCGACAGCCTGCTGAAAAGTTTCGGCTCAGTTACCTCGAGAAAGATGGCGACTGCAGCGAGATACTCAGGATCCTATACGTATAATGACAGGTC CATCGAACAGTCGCTGGCCGATTTCAAGATCAAAGATGGGTATGTGTTCAAAGGGGTGATTGCTTCAGGACCGGCCGAGCCTCGAGCATGCGGCTGCATA GCTCCTCCTCCGGTGGTCAACCAGGTTGCTCCGATTTCCGCCATTGAGAATATCACTGTCCAGAAGCTGACTCCTGAGTATAAGATCGGGATGGGGCGGC TGGTGAAGAGCAAAGGACCTCCCATGAAGGCTTCAGAATTGTGGCGCGACAAACCGGCCGTTTTCCTCTGTATCAGACGTCCCGGGTGTGTCATGTGCCG AGCCGAAGCTCATCAGCTCTACGCTAGAAAGCCTATATTCGACGCAATGGGGGTTCAACTATTTGCAGTTCTTCACGAGCACATAGAGTCGGAGGTACAA GATTTCTGGCCGCGGTACTGGGGAGGAGTGGTACTCTTGGACCGGGGTCTCGAGTTCTTCAAAGCCCTTGGCGGTGGAAGCCTTCTGAAGGACAAGTTCA TATCTGGATTCATCTTCAATCCCCGCGCGATTTCGAACTACAAACGAGCCAAAGCCATGGGACTCGACCACAACTTCAGAGGAGAAGGTGAGATCAAAGG TGGACTCTTCATAGTAGGAAGGAAGAAGTCTGGCATTGCTTACCAGTTCGTCGAGAGGAACTTCGGCGATTGGGCTCCCATCGCTGAAGTTTTTGAGATA TGCACCAAGTTGCAGAACCAGCAGCATGATCAAGGAGAGTCGCGAAGATCTTCTCAGGAGTATGTCTGA
AA sequence Show only first row Show all	>Lus10029111 pacid=23151696 polypeptide=Lus10029111 locus=Lus10029111.g ID=Lus10029111.BGIv1.0 annot-version=v1.0 MASFSMEDFVGNGVLKGLLPKLLEEGWDDVPTLKIMTDEDMDAINLTKRQKEALEIRTYVHDRALMYYADRVEASGKSLQELLALSRTDVASLFGMKRGH AARFLDRTTACTEPLSKPDDTAFPARKSHRPEPSRSDSLLKSFGSVTSRKMATAARYSGSYTYNDRSIEQSLADFKIKDGYVFKGVIASGPAEPRACGCI APPPVVNQVAPISAIENITVQKLTPEYKIGMGRLVKSKGPPMKASELWRDKPAVFLCIRRPGCVMCRAEAHQLYARKPIFDAMGVQLFAVLHEHIESEVQ DFWPRYWGGVVLLDRGLEFFKALGGGSLLKDKFISGFIFNPRAISNYKRAKAMGLDHNFRGEGEIKGGLFIVGRKKSGIAYQFVERNFGDWAPIAEVFEI CTKLQNQQHDQGESRRSSQEYV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	0	1
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	1.4	0.9330
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	2.4	0.9235
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	2.8	0.9030
AT5G46940			Plant invertase/pectin methyle...		Lus10015199 [exp]	3.7	0.8865
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	4.2	0.9244
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023980 [exp]	5.3	0.8672
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	5.9	0.9128
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	6.9	0.8450
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10035601 [exp]	8.1	0.8756
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	9.2	0.9212

Compare expression of checked genes

Lus10029111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.