Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 197 / 5e-58 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 124 / 3e-32 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 117 / 7e-30 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013050 [exp] 360 / 4e-118 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10013216 [exp] 117 / 6e-30 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 117 / 8e-30 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 58 / 2e-09 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10005988 [exp] 57 / 2e-09 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 53 / 7e-08 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10039402 [exp] 51 / 2e-07 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 51 / 3e-07 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 51 / 4e-07 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112900 [exp] 236 / 6e-72 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 229 / 2e-69 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 136 / 1e-36 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 134 / 5e-36 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.003G201000 [exp] 62 / 5e-11 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.012G019900 [exp] 60 / 4e-10 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 58 / 1e-09 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.014G102000 [exp] 56 / 5e-09 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 52 / 2e-07 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 48 / 2e-06 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029112 pacid=23151838 polypeptide=Lus10029112 locus=Lus10029112.g ID=Lus10029112.BGIv1.0 annot-version=v1.0 ATGCTCTATCTCGCCAGAACCTATGACTTCACGTCTGTGTTTAGCGAATTCCTGACGAAAACATCGAGTGACGAAGTCCAGAGGCTGTCAGCATTCGGGC TGGAGAATCTGTCAGCAGAATCTGTAAACCTGTCAAAACCACCACCAAAGGCCAAAAAACCGAATTCGATCGCAAAAAGCTCCAGCTTTCGAAAGTTCTT ATCTTTCGGGCCATCAAAGAAGAATACAAGGACAAGGACCGCGACCATCTGTCAGGTTCACCGAGGAGTATGCTCCTCGCGGGACACATTCTGCTTAGTT GAAGCAAAAGCGGTGGAGAGGCTGCTAATGTGCTTGGATCACGAGAATATTAAGGTCGTTGATGCTGCGTTATCAGCCATATCGACTCTGTTGGATGAAA GAGTCAATCTCAATAGCAGCGATGCATTATTGACCGAAATGAGTGCTGTAAGGCAAATCCTGCAGGTGCTGAAAGATCAGAGAAGTGAAGTTCTATGGCA CAAGTGCTTCTGGGTTCTAGAGAGGTTCCTGACGAGTAATGGCGGTTACTGTTCCGTTCAAGATATATCGAATGACAGGTCGTTGCCTGCGATTTTGATC AGTGCTTACCATCACGGGGATGGTGATACTCGTCAGATGGCCGAGAACCTGAACCGGGGCCTAGCTACAGAACTACCCATTTTACCATGTAGATAA
AA sequence Show only first row Show all	>Lus10029112 pacid=23151838 polypeptide=Lus10029112 locus=Lus10029112.g ID=Lus10029112.BGIv1.0 annot-version=v1.0 MLYLARTYDFTSVFSEFLTKTSSDEVQRLSAFGLENLSAESVNLSKPPPKAKKPNSIAKSSSFRKFLSFGPSKKNTRTRTATICQVHRGVCSSRDTFCLV EAKAVERLLMCLDHENIKVVDAALSAISTLLDERVNLNSSDALLTEMSAVRQILQVLKDQRSEVLWHKCFWVLERFLTSNGGYCSVQDISNDRSLPAILI SAYHHGDGDTRQMAENLNRGLATELPILPCR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	1.0	0.9624
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	2.4	0.9401
					Lus10040954 [exp]	3.2	0.9405
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	5.5	0.9441
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	5.5	0.9501
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	6.9	0.9340
					Lus10023403 [exp]	7.1	0.9195
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	8.8	0.9323
AT5G06130			chaperone protein dnaJ-related...		Lus10021316 [exp]	9.0	0.9386
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	10.8	0.9269

Compare expression of checked genes

Lus10029112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.