Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 531 / 1e-174 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 170 / 1e-43 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 150 / 2e-37 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G23030 76 / 7e-14 PUB11 ARM repeat superfamily protein (.1) AT1G71020 67 / 2e-11 ARM repeat superfamily protein (.1.2) AT5G42340 65 / 2e-10 PUB15 Plant U-Box 15 (.1) AT4G36550 64 / 3e-10 ARM repeat superfamily protein (.1) AT3G46510 63 / 6e-10 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G57035 62 / 2e-09 U-box domain-containing protein kinase family protein (.1) AT2G28830 61 / 3e-09 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013050 [exp] 1324 / 0 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10013216 [exp] 191 / 3e-50 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 188 / 4e-50 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 107 / 1e-23 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013049 [exp] 80 / 4e-18 AT1G64750 49 / 1e-09 deletion of SUV3 suppressor 1(I) (.1), deletion of SUV3 suppressor 1(I) (.2), deletion of SUV3 suppressor 1(I) (.3) Lus10030583 [exp] 75 / 2e-16 AT1G64750 47 / 9e-09 deletion of SUV3 suppressor 1(I) (.1), deletion of SUV3 suppressor 1(I) (.2), deletion of SUV3 suppressor 1(I) (.3) Lus10030906 [exp] 75 / 2e-16 AT1G64750 47 / 1e-08 deletion of SUV3 suppressor 1(I) (.1), deletion of SUV3 suppressor 1(I) (.2), deletion of SUV3 suppressor 1(I) (.3) Lus10030224 [exp] 84 / 4e-16 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10040659 [exp] 82 / 1e-15 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136500 [exp] 714 / 0 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 682 / 0 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 278 / 4e-81 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 189 / 5e-50 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 82 / 1e-15 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 81 / 4e-15 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G024600 [exp] 79 / 6e-15 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.010G113900 [exp] 75 / 1e-13 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.003G201000 [exp] 74 / 3e-13 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.014G102000 [exp] 74 / 4e-13 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0229 [flax] [poplar] PF05160 [flax] [poplar] DSS1_SEM1 DSS1/SEM1 family
Representative CDS sequence Show only first row Show all	>Lus10029113 pacid=23151750 polypeptide=Lus10029113 locus=Lus10029113.g ID=Lus10029113.BGIv1.0 annot-version=v1.0 ATGGCGGCTGAGCAGAAATCAATGACGGAGGACGTGAAGATGGACCTTTTCGAGGATGATGACGAGTTCGAGGAGTTCGGCATCAACCAAGAGTGGGACG ACAAGGTGGAAGAGAAAGAGGTGTCTCAGCAATGGGAAGATGACTGGGATGACGACGACGTTAACGACGATTTCTCTCTACAGCTGAAGAGGGAATTGGA GAACAACAATGAACATCAGATGAGCTCACTCTTACCACAAGAAGAAACAGAGGAAGGGGAAGAAGTCCACCAGCTCAGGAAAGATGAACCCCAGGTAGCA GACACAATAGCTAGGTCAAGGTTGATGTCGCTTGACAGGGATCAGCTCCTGATTGATGCTATCGTTGAATCCTTGCTGGCATCAACTTCCGACATCATGG AATCAGTGTCATACATAGAATCAGAACAGGAGATCTTCTACGAAACTGGATGCTACGTATACCGCACTTCTTTTGCAGTTATGGAGTTGCAGACAACGGA GAATCCTCCGGAGAATGCCAAGGAGATCCTGGAATCTCTTTCCAGGAGTGTCAACCAAGCCAGGAATCTTATTAGCAGGTGCAGGAGTGATGAGAAAGAT TCGATTTCTGACTCCGAGCTGAGAAACATCCTGCTGCCTCAGCTCGAGGGTGCGATCAAATCCGCTGGCGAGATCTTGAGTAACATCCCTTCATCGACAT ATACAGACCATAAATATGCAGAAATGGCAGTCAGGTCCATTGCCAGCGAGATGCAGAACGCTCAGTTCAAGGTCAGTCCAATTTTGCACAAAGAGTCAGA AGAAGCCATAGAATCAGACCTCTACCCTATCAAAGTTGAATTTTCCAGAGAGAACTCCCGGAAAGTATCGAACTTTCCGCAGTTGCATCAGGTCCTGAGA CCGACAAGTACTACATCGAGCCAAGGGAACCGATATTATTACAATAGCGCATCCGGATCATCGTTTCCTGAGATGGCTAATCACATTGAGCCTCTATACG ATACCTTCTGCTGTCCATTAACAAAACAGGTCATGGAAGATCCTGTCACGATTCAAAGCGGACTCACGTTCGAAAGAAAAGCGATTGCGATGTGGTTCCA GGAGTCCGAGAACTTGCCTGAAGTTTTCTGTCCGATCACGGAGATGAAACTGACAAGTAGAGTCCTGACGACTAACGTTGCCTTGTGGACCACAATCGAG GAATGGAAAGAACGGAACGAGGCTGCGAAGATCAAGGTCTACCGAGCTGCTTTGTCCTTAGCTAGTACAGCAAGCATGGCGATCGAAGCAGTGAAGGATT TGCAGGGAATCTGCAGAAATGATTGCGGATCGGTCGATTTGTCGACAGTGGTGAACCTCCTATTGAGCGGCCACCAGGTTATCAAACATGAAGCATTGCT CTTGTCGCTTGAGCTTGCAAGATTGGGGTCGCTGTGCAAGAGAATCGGATCAATTACCGGATCAATTCTGATGCTTATCAGACTCAAGTACAGCCATTCG CTCGATTCGTTTGCATCGGAGAAGGCGGACGAAATCCTGAAGTGCCTCGGGAGGTATCCCGAGAACATAAAGCAAATGGCAGAGAATGGCTTCCTGGAGC CCCTTATACATAATCTTTCCGAAGGTTCCGAGGAGATGCAGATGGAAATGGCAAGTTATTTAGGAGATATTTCTCTGGGACATGAAAGCAAGACCTATGT TGCCAACAGTGCTTCCCCAGCACTCATCAGAATGGTTCGCAGCGGGAACACACTGATCCGACGAGCAGCGTTCAAAGCGCTAGCTCGAATCTCGTTGTAC CACCCTAACGCAGAGATACTCACCGAGGCGGGAATCCTGCAGATCATGGTCGAAGAGATGTTTTCGAGAAGAATCCACAACAAACCGATGGACTCGAAAG CTGAAGCTGCTGCGATCCTCGCAAACATATTCGAGGCAGGAGTCAACGAGCTTCTTCACAACCTGAAAGTGAACGCGTTTGGCCACAAAGTAAACTCGGA CTATGTTGTGTACAACATCGTCCGGATGGTCAACAACACGACTCCTGAAGAAGTCAACGTTAACTTAATCAGAATCCTGATGTGTCTCGCTGAGTCGAGC AAATCGTTGGCTACAATTGTCTCAGTGGTTAAACAGTCGGAAGGGAGCTACAGTCTGATCGAACTGATCAACAATCCTCACGAAGAGCTAGGCGTTTCGG CCATCAAGCTGCTCGGAAAGCTATCGCCTTACATGGGGCACACGGTAATTGAGAGACTGTGCAAGACGAGAGGTTTGCCCGGGAACTTGATCATTAAGCA AACCGAAACAACCAGAATCACAGAGAGGCAAGCAGTTTCAGCATTGTTTTTGGCTAAACTGCCACACAAGAACCTGACACTCAACTTGGCACTTATTATT GTAGTCCCGAAAATCGTGGAATCGATCGGTCAGATTCAAAGAACCGGACCGGATCGAGCAGGCACTCGAGCGTTTATCTCGAAGTCCTTGTGGGTGTCCT CGTGA
AA sequence Show only first row Show all	>Lus10029113 pacid=23151750 polypeptide=Lus10029113 locus=Lus10029113.g ID=Lus10029113.BGIv1.0 annot-version=v1.0 MAAEQKSMTEDVKMDLFEDDDEFEEFGINQEWDDKVEEKEVSQQWEDDWDDDDVNDDFSLQLKRELENNNEHQMSSLLPQEETEEGEEVHQLRKDEPQVA DTIARSRLMSLDRDQLLIDAIVESLLASTSDIMESVSYIESEQEIFYETGCYVYRTSFAVMELQTTENPPENAKEILESLSRSVNQARNLISRCRSDEKD SISDSELRNILLPQLEGAIKSAGEILSNIPSSTYTDHKYAEMAVRSIASEMQNAQFKVSPILHKESEEAIESDLYPIKVEFSRENSRKVSNFPQLHQVLR PTSTTSSQGNRYYYNSASGSSFPEMANHIEPLYDTFCCPLTKQVMEDPVTIQSGLTFERKAIAMWFQESENLPEVFCPITEMKLTSRVLTTNVALWTTIE EWKERNEAAKIKVYRAALSLASTASMAIEAVKDLQGICRNDCGSVDLSTVVNLLLSGHQVIKHEALLLSLELARLGSLCKRIGSITGSILMLIRLKYSHS LDSFASEKADEILKCLGRYPENIKQMAENGFLEPLIHNLSEGSEEMQMEMASYLGDISLGHESKTYVANSASPALIRMVRSGNTLIRRAAFKALARISLY HPNAEILTEAGILQIMVEEMFSRRIHNKPMDSKAEAAAILANIFEAGVNELLHNLKVNAFGHKVNSDYVVYNIVRMVNNTTPEEVNVNLIRILMCLAESS KSLATIVSVVKQSEGSYSLIELINNPHEELGVSAIKLLGKLSPYMGHTVIERLCKTRGLPGNLIIKQTETTRITERQAVSALFLAKLPHKNLTLNLALII VVPKIVESIGQIQRTGPDRAGTRAFISKSLWVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	1.0	0.9624
AT4G27120			unknown protein		Lus10011161 [exp]	2.0	0.9411
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10004006 [exp]	2.6	0.9298
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	3.2	0.9308
					Lus10040954 [exp]	3.5	0.9337
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	3.5	0.9307
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	4.0	0.9277
					Lus10009362 [exp]	4.2	0.9252
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	4.5	0.9173
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	7.4	0.9246

Compare expression of checked genes

Lus10029113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.