Plant FIBer expression Database

Lus10029114 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10740 748 / 0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
AT1G23330 696 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013048
[exp]
912 / 0 AT1G10740 779 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030904
[exp]
820 / 0 AT1G10740 763 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030585
[exp]
820 / 0 AT1G10740 766 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030586
[exp]
367 / 9e-127 AT1G10740 356 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044400
[exp]
759 / 0 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.008G187900
[exp]
744 / 0 AT1G10740 709 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.016G114350
[exp]
219 / 3e-70 AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.004G029200
[exp]
204 / 3e-64 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10029114 pacid=23151740 polypeptide=Lus10029114 locus=Lus10029114.g ID=Lus10029114.BGIv1.0 annot-version=v1.0
ATGAGGGGATGGATATCGGCGGCGCTGCAATTGGCGGAGCTGTTCGTGAGCACCGTGGTCCATATGCTTTACGGGTTCTACATATTCAGCTCCGCCGTCG
CCGGCGATCTCTCCCAGGGTTTTAGCGATTGGTTCTTCAAGCCTAATATGAACCTCGTCGTCAAGGACGATCCCGCCGCCTCCGCCGCCGGAAATCGTTC
TTCCTCCGTTGAAGAGCTTCCTCCGATCGTCTTGGTCCATGGGATCTTCGGGTTCGGGAAAGGGAGATTGGGGGGTTTATCGTATTTTGCAGGGGCGGAG
AACAAAGATGAAAGGGTTCTTGTTCCTGATTTGGGCTCTCTAACCAGCATCTACGATAGGGCAAGGGAGTTGTTCTATTATCTGAAAGGTGGCCAGGTTG
ATTATGGCGAAGAACACAGCAAATCCTGTGGCCATTCCCAATTCGGAAGGACATACGAACAAGGGAATTATCCAGAATGGGATGAAGATCATCCAATTCA
TTTCGTTGGACATTCTGCTGGAGCACAGGTTGTTCGAGTTCTGCAGCAAATGCTTGCTGATAAGGCCTTTAAGGGTTATGAGAACACTTCTGAGAATTGG
GTGTTGAGCATCACATCTTTATCAGGTGCATTCAATGGAACTACAAGGACCTACTTGGATGGAATGCATCCAGAAGATGGGAAGAGCTTGAAACCAATAT
GTCTGCTGCAAATCTGCCGCCTTGGCGTGATTGTCTACGACTGGCTGGACATATCATGGCTCAAGGCTTACTACAACTTCGGGTTCGACCACTTCGATTT
GTCGAGGAAGAAGATGGGGATTGCAGGTCTGGTTGATTGTCTGCTGGGGAATGCTGGTCCGTTTGCTTCAAAGGATTGGATACTGCCTGACTTGACGATT
CAAGGGTCTTTAGAACTCAACTCTCATTTGCAAACGTTCCCCAATACTTACTACTTCAGCTATGCGACAAAGCGGACGAGGAAGATCATGGGCGTTACGG
CGCCTTCAAGCGTTTTTGGTGTCCATCCTATGCTGTTCATCAGAGTTCTGCAGATGAGCCAGTGGCGTCACCCTTCTGATGTCCCTCATCCTTACAAAGG
ATACAGAGATGAGGATTGGCAAGACAATGATGGAGCTCTAAACACCATATCAATGACGCACCCTCGCTTCCCAGTCGAGCATCCGAGCCACTTCATTCAA
GACGATTCCGAGTGCCAGTCTTTGCTGCCCGGAATCTGGTACTATAAAGTAGTTGAAGGAGATCACATACTGTTCATAGTGAACAGGGAAAGAGCAGGAG
TGCAGTTTGATTTGATATACGACAGCATTTTTGAACGCTGCAGGAAGCATGTATTTAAGAGGAATCCACAGTTGTTACCCAATGAAGACAGAGCTAAGGT
AGGAAAAGAAAGAGCAGAAAGATCCAGTTAG
AA sequence
>Lus10029114 pacid=23151740 polypeptide=Lus10029114 locus=Lus10029114.g ID=Lus10029114.BGIv1.0 annot-version=v1.0
MRGWISAALQLAELFVSTVVHMLYGFYIFSSAVAGDLSQGFSDWFFKPNMNLVVKDDPAASAAGNRSSSVEELPPIVLVHGIFGFGKGRLGGLSYFAGAE
NKDERVLVPDLGSLTSIYDRARELFYYLKGGQVDYGEEHSKSCGHSQFGRTYEQGNYPEWDEDHPIHFVGHSAGAQVVRVLQQMLADKAFKGYENTSENW
VLSITSLSGAFNGTTRTYLDGMHPEDGKSLKPICLLQICRLGVIVYDWLDISWLKAYYNFGFDHFDLSRKKMGIAGLVDCLLGNAGPFASKDWILPDLTI
QGSLELNSHLQTFPNTYYFSYATKRTRKIMGVTAPSSVFGVHPMLFIRVLQMSQWRHPSDVPHPYKGYRDEDWQDNDGALNTISMTHPRFPVEHPSHFIQ
DDSECQSLLPGIWYYKVVEGDHILFIVNRERAGVQFDLIYDSIFERCRKHVFKRNPQLLPNEDRAKVGKERAERSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10740 alpha/beta-Hydrolases superfam... Lus10029114
[exp]
0 1
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10042731
[exp]
1.0 0.8619
AT1G33590 Leucine-rich repeat (LRR) fami... Lus10002936
[exp]
5.1 0.8522
AT1G78100 AUF1 auxin up-regulated f-box prote... Lus10036451
[exp]
6.3 0.7951
AT1G18390 Protein kinase superfamily pro... Lus10016737
[exp]
9.0 0.7589
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10029692
[exp]
17.6 0.8210
AT4G31290 ChaC-like family protein (.1) Lus10026985
[exp]
21.2 0.8003
AT3G62260 Protein phosphatase 2C family ... Lus10038058
[exp]
34.3 0.7977
AT4G17880 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) ... Lus10004575
[exp]
36.8 0.7633
AT5G52810 NAD(P)-binding Rossmann-fold s... Lus10039290
[exp]
45.8 0.7626
AT2G40600 appr-1-p processing enzyme fam... Lus10034226
[exp]
51.2 0.7705

Lus10029114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.