Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60770 312 / 5e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 136 / 2e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 133 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 128 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 118 / 7e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 116 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 110 / 4e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 99 / 3e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G28020 76 / 6e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11380 68 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013047 [exp] 446 / 2e-156 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 155 / 3e-43 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 141 / 7e-39 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004173 [exp] 140 / 3e-38 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 139 / 3e-37 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008724 [exp] 121 / 6e-31 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 115 / 1e-28 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 114 / 4e-28 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 106 / 2e-25 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079600 [exp] 343 / 4e-116 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 336 / 3e-113 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 151 / 7e-42 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G119000 [exp] 143 / 5e-39 AT1G02370 456 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 134 / 2e-35 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G050300 [exp] 122 / 3e-31 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 121 / 5e-31 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G133000 [exp] 120 / 7e-31 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G160100 [exp] 120 / 2e-30 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 117 / 1e-29 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029115 pacid=23151780 polypeptide=Lus10029115 locus=Lus10029115.g ID=Lus10029115.BGIv1.0 annot-version=v1.0 ATGTGCGCTAGGAGTTGGATTAAGGATGCAATATGTAAAGATGTTAAACTTGGAAAGAAAACTGAAGATGCTATGAAAGGTTTAGAAAGTTGTTTTTCCG CTCTACTAATGGAAGATGTAAGTTGTGAAGAGTTTGCAAAAGGAGCCTCCATTTATGCTGATGCTAAGCTGTTTGATAAAGCAGATAAAGCACTGAAAGA ACTGGAGAATCTCAATGGCGAGAAGAAAAATCTATCTGCTTTCCAGTTTTTGATTACACTGTATGGGAAGACTGGCAATTTGGAAGAGGTTTACCGTATG TGGCGTTCTTTACGTGTGACATTTCCAAAAACAGCAAATATAAGCTACTTGAATATGATTCAAGTGCTGGTCAACTTGAAAGATTTGGCAGGTGCAGAGA AATGTTTCAGGGAATGGGAAGCTAGCTGCTCGACTTACGACATCAGAGTAGCGAATGTTCTTATCAAAGCTTATGCCAACGAGGGATCGCTAGAGAAGGC CGAGAAATTGAAGAATAAGGCCGGGAGAAGGGGCGCTGAGCCTAATGCTAGGACATGGGAGGTATTCTCGGAGTACCATTTCAAGAAAGGAAACATGAAG AGGACGGTTGAGTGTCTGTCCAATGCTATAGATGTTGGGAAAGGAGATGGTAAGAAATGGGTTCCTTCTGACGAGGTTGTCGCTTCTTTGATGGCGCGTT TCGAGCAAGCGGGGAATGTGGAAGGTGCAGAAGGGTTTATAGAGGTTCTCAAGAAGGGTGGAGATAAGTTGGGAGCTGAGGTGTTTGAGTCGTTGATTAG GACTTACTCGGTTGCTGGAAGGACGACAAACGTGATGCGCCGCAGATTGAAGATGGAGAATGTGGAGGTTAGCGAGGCTAGCCGGAAGTTGCTCGACGCA ATCAGTGTAGAGTAA
AA sequence Show only first row Show all	>Lus10029115 pacid=23151780 polypeptide=Lus10029115 locus=Lus10029115.g ID=Lus10029115.BGIv1.0 annot-version=v1.0 MCARSWIKDAICKDVKLGKKTEDAMKGLESCFSALLMEDVSCEEFAKGASIYADAKLFDKADKALKELENLNGEKKNLSAFQFLITLYGKTGNLEEVYRM WRSLRVTFPKTANISYLNMIQVLVNLKDLAGAEKCFREWEASCSTYDIRVANVLIKAYANEGSLEKAEKLKNKAGRRGAEPNARTWEVFSEYHFKKGNMK RTVECLSNAIDVGKGDGKKWVPSDEVVASLMARFEQAGNVEGAEGFIEVLKKGGDKLGAEVFESLIRTYSVAGRTTNVMRRRLKMENVEVSEASRKLLDA ISVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10029115 [exp]	0	1
AT4G16450			unknown protein		Lus10039057 [exp]	1.0	0.9352
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	8.0	0.9190
AT5G52370			unknown protein		Lus10016449 [exp]	10.0	0.9115
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	12.2	0.9157
AT3G45400			exostosin family protein (.1)		Lus10013627 [exp]	13.6	0.8237
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001372 [exp]	18.2	0.8604
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10000165 [exp]	20.0	0.9000
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	23.9	0.9048
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	24.2	0.9090
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	24.2	0.9043

Compare expression of checked genes

Lus10029115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.