Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1) AT1G78460 68 / 8e-14 SOUL heme-binding family protein (.1) AT1G78450 66 / 7e-13 SOUL heme-binding family protein (.1) AT5G20140 42 / 0.0002 SOUL heme-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013045 [exp] 360 / 5e-128 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1) Lus10001247 [exp] 128 / 1e-36 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1) Lus10042093 [exp] 127 / 3e-36 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1) Lus10041532 [exp] 74 / 1e-15 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10012559 [exp] 74 / 3e-15 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044200 [exp] 162 / 6e-50 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.015G080000 [exp] 120 / 2e-33 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 110 / 9e-30 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.001G379000 [exp] 87 / 9e-21 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 48 / 2e-06 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10029117 pacid=23151822 polypeptide=Lus10029117 locus=Lus10029117.g ID=Lus10029117.BGIv1.0 annot-version=v1.0 ATGGCTTCTCGCTGGTCGCACCTACTCTTAGCATCAATCTTTTCCCTAACCATTGCCAATCTCCATTCAACTCGGCATCTCTGCAGTCGACTCGCCACAG TACACAGTGGTCCACTCGGAACCAGACTACGAAATCAGACTCTACAGAGACATCCAATGGGTTTCATCTCTCGTTCAGGAACCTCGTCCTTCAACACATC TACCAAACTCGGCTTCCACAGGATCTATCAGAACATTCACGGAGCAAATGCAAACTCGACTCAACTACCAATGACTGCACCAGTCGTAACAGCCATTACT CCCGGGCCGCAGCAAGCTTCACTCTATTACCACGTGAAGCTGCTCTTGTACAAAGGGAATATTCCAGCCCCGAATCAGGGCCTGGATCTAGAGCTAGAGA AGTGGAAGGCTAGGTGTCTAGCAGTAAGGAAGTTCTCCGGGTTTGCCGGAGATGATAATGTTAAGAAAGAAGTCGATGCTCTTGCCAGCAGCCTGAAGAT TAAGCAGGTTTTCGAAGGGGTGGTTAATGGTGAAGATAGTGCTACTATGGTGGGATATAACGGCTCATATGCCGTTGCACAGTACAATGCTTCACGACAC CTAACCGGTCGGGTGAATGAAGTTTGGATCGACCTTACTGATCGTAAGATCGCATCAGTGTGTAACATATAA
AA sequence Show only first row Show all	>Lus10029117 pacid=23151822 polypeptide=Lus10029117 locus=Lus10029117.g ID=Lus10029117.BGIv1.0 annot-version=v1.0 MASRWSHLLLASIFSLTIANLHSTRHLCSRLATVHSGPLGTRLRNQTLQRHPMGFISRSGTSSFNTSTKLGFHRIYQNIHGANANSTQLPMTAPVVTAIT PGPQQASLYYHVKLLLYKGNIPAPNQGLDLELEKWKARCLAVRKFSGFAGDDNVKKEVDALASSLKIKQVFEGVVNGEDSATMVGYNGSYAVAQYNASRH LTGRVNEVWIDLTDRKIASVCNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17100			SOUL heme-binding family prote...		Lus10029117 [exp]	0	1
AT2G37195			unknown protein		Lus10026508 [exp]	6.5	0.8242
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	12.0	0.7820
AT5G50090			unknown protein		Lus10004229 [exp]	18.7	0.8094
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	20.8	0.7654
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	22.3	0.8189
AT3G57630			exostosin family protein (.1.2...		Lus10042357 [exp]	30.0	0.7586
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	30.5	0.8018
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	31.4	0.7947
AT1G51405			myosin-related (.1)		Lus10009954 [exp]	35.5	0.7505
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000021 [exp]	40.1	0.7693

Compare expression of checked genes

Lus10029117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.