Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10760 1840 / 0 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT4G24450 1117 / 0 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT5G26570 155 / 9e-38 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT1G69830 48 / 7e-05 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013044 [exp] 2754 / 0 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 1179 / 0 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10041275 [exp] 157 / 2e-38 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10037434 [exp] 154 / 1e-37 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10030793 [exp] 56 / 3e-07 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10013270 [exp] 56 / 3e-07 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 46 / 0.0003 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10036717 [exp] 45 / 0.0004 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188150 [exp] 2096 / 0 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.010G044100 [exp] 2095 / 0 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.002G234500 [exp] 168 / 8e-42 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 163 / 3e-40 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G092900 [exp] 46 / 0.0002 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF01326 [flax] [poplar] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029118 pacid=23151768 polypeptide=Lus10029118 locus=Lus10029118.g ID=Lus10029118.BGIv1.0 annot-version=v1.0 ATGAGTAATAGCATAAGTCATAATTTATTCTATCAGAGTTTGCTTCATCCCAAGGTTGTCGACCACAGAAGCAAATCCAAAGCTTCTGGCGTTGTTGCAA ACTCCTCGTTTCAATCTGCTTCTGTCAGCCAAGCTGCATTACCTACGCTTGGGGTTACTACCCCGTCGTCATGTTTCTATGGAGGAAGATTGAAAACAAA GAAATCAAAGGTGTCTGCTGGGAGAAGTCGTCCTGTTGCAGTCACGCCGCGAGCTGTACTGGCGATGGAACAACCATCCGAGCTTGCTGGTAAATTTCAA CTCGATCACAATGCAGAGTTGCAGGTTTTCATTAGCAATTCTCCTACTGCACCGGTTACTACTGTAAATATTCAGTTGACATATACTAGTGACTCGTTGA TCCTCCACTGGGGTGGGATACATGATGCAAGAGAGAAATGGGTGCTTCCTGCTCGTTGCCCGGATGGGACGAAAAACCATAAGAACAGGGCTCTTAGAAC GCCTTTCTCAAAGGCTGGTTCAAGTTCTTTCCTCAAACTAGAGATTGATGATCCTAATATCCAAGCTATTGAGTTCCTCATATTTGATGAAGCCAAAAAC CAATGGTTTAAAAATAGTGGCCAGAACTTTCATGTGAAGTTTCCCCCTAGAGAGAAGTTTATCAGTTCAAATGTTTCAGTTCCTGAAGAGCTTGTACAAG AGGAATACGAAGCTGCTCGTGCTGAGTTATTGGAAGAAGTAGCCAGAGGCTCTTCTGTAGAAGACCTCCGAGCAAAGCTGAATAGTAAAAATGATAGAAC TTCAATTAAGGAGTCCCCGGTCTCTGAAGTAAAGAGCAGCATACCCGAGGATCTTGTGCAAGTGCAATCATATTTACGATGGGAAAGAGCAGGGAAACCT GATTACTCCACAGAACAACAACTGCGAGAATTCGAGGAGGCGAGAGCAGAGTTGCAAGCTGAGCTTGACAGGGGTGTGTCTCTGGATGAGATCAGAAAGA AAATCACTAAAGGCAATACTCATACAAATGCTGGTGTGAAGCCAAAGAAGGAAAACTACGTCAGCACTGAAAGGATTCGGCGCAAAAGTAGGGATTTGAT ACAAATTGTCACTAAATATAAAGCTGACTCAACAATGGAAGTAGTTCCCGCGGAACCAAAATCTCCAAAGCCAATTGAGCTATATGCCAATGCTATTGAA GAACAAGCTGGTGACACTATCCTCAACAAGAAAAAATTTAAGCTCGGGGATAAAGAGATTCTGGTACTTGTAAGCAAACCTGGCGGGAAAATCAAGGTTC ATGTTGTCACTGATCTTGAAGAATCAGCTATTCTTCATTGGGCTTTAGCTAAAAATCCTGGAGAGTGGTCGGCACCACCTGCGAGCGTCTTGCCTCCAGA TTCAATTCCTCTGAAGGAAGCTGCTGAAACACCACTCACAAAACCTTCTGCCGAACTTCCTTATCAGGTCCAGTCGTTTCAAATAGAGATCGAAGATAGT AGTTTTGTAGGAATGCCTTTTGTTCTTTTGGCTAACGGCAATTGGATGAAGAATAATGGCTCAGACTTCTACGTTGGATTTTCCAGCCCAGCTAAGAAAG TGCAAAAGGATGTCGGTGATGGGAGAGGTACGGCAAAGACATTGTTGGACAGAATTGCAGAGATGGAAGGGGAGGCACAGAAGTCTTTCATGCATCGGTT CAATATTGCGTCTGATTTAATGCATCAAGCAAAGGATGCTGGAGTTCTGGGTATTGCGGCTATCTTTGTTTGGAAGAGGTTTATGGCGACCCGGCAACTT ATATGGAACAAGAACTACAATGTCAAACCACGTGAGATCAGTCAAGCCCAGGATAGGCTTACTGACATGCTCCAAGATATTTATTCTAGCTATCCACAGT ACCGAGAGTTTTTGAGGTTGATTCTGTCAACTGTTGGTAGAGGAGGTGAAGGAGATGTGGGGCAGCGTATTCGAGATGAAATACTGGTTATTCAGAGAAA CAATGATTGCAAAGGTGGAATGATGGAGGAATGGCACCAAAAATTACACAATAACACTAGCCCCGATGATGTTATAATCTGCCAGGCTTTGATTGATCAC ATAAGTAGCGACTTCGACATGAGTGTCTACTGGAAAACTTTGAATGACAATGGCATTACAAAAGAGCGACTTTTAAGTTACGATCGTGCCATACATAATG AACCGAATTTTAGGAGGGATCAAAAGGATGGCCTTTTGCGCGATCTTGGAAGCTATATGAGGACATTGAAGGCAGTACATTCAGGTGCAGATCTTGAGTC TGCTATTGCAAATTGTATGGGCTATAAAGCAGAGGGGCAAGGTTTTATGGTGGGAGTGAATATTAATCCAGTTTCAGGCTTGCCTTCTGGATTTCCGGAA TTGCTTCAATTTGTCCTGAAACATGTTGAGGACAGGAATGTAGAAGCACTTCTGGAGGGTTTACTTGAGGCTCGTCAGGAGCTTAGACCATCACTGTCCC AAGCTAACCCTCGCCTGAAAGATGTTCTGTTTTTGGACATTGCACTTGATTCTGCAGTTAGGACAGCCATTGAAAGAGGGTATGAGGAATTAAACGATGC TGGCCCTGAGAAAATTATGTATTTCATTTCTCTGGTAGTTGAGAATCTTGCACTTTCATCAGATGACAATGAAGATCTTATCTACTGCTTAAAGGGATGG AACCAAGCCATGAAGATGTCGAAAAGAAATAACAACTGGGCATTATATGCGAAGTCGATCCTGGACAGAACTCGTCTTGCCCTTGCTGGAAAGGCAGAGT CATATCAGGATATTCTGCAGCCTTCAGCTGAGTATCTTGGATCACTGCTTGGAGTGGATCAGTGGGCTGTAGAAATTTTCACGGAAGAGGTCATCCGTGG GGGTTCAGCAGCTGCTTTGTCGTCACTTCTTAATAGACTTGATCCGGTTCTACGTAAAACAGCTAATCTTGGAAGTTGGCAAGTTATCTGCCCAGCTGAA GCAGTTGGGTACATTGTTGTTGTGGATGAGTTGCTCTCAGTACAGAACAAAACATACGACCGACCTACAATATTGATTGCGAAAAAAGTAAAAGGTGAAG AGGAAATACCAGATGGTACAGTTGCCGTGCTAACACCAGATATGCCTGATGTCCTATCACATGTATCCGTCCGTGCAAGAAATGGCAAGGTTTGCTTTGC TACATGTTTTGACCCTAACATTCTGGACGATCTCCAAGCGTGTGAAGGGAAACTACTGCGTCTGAAACCTACTTCTGCAGAAATAGTTTACAGTGAAGTA AAAGAGGATGAGCTGGAAGGTCCTAGTTCAACTAGCTTAAATGATGTTGATTCTTCATCTCTGAAGTTGGTCAAAAAACAATTTACAGGAAAATATGCCA TATCATCAGACGAGTTCACCAGCGAAATGGTTGGTGCCAAGTCCCGCAATATCTCGTATTTGAGAGGAAAAGTTCCATCATGGATCGGTATTCCAACATC AGTTGCCTTGCCTTTTGGAGTTTTTGAGAAGGTTCTTGCCGATGGTTTAAATAAGGATGTTGAGAAGAAGCTGCAACTATTGAAGGAGAAGTTGGACACA GGAGAATTCGGTGTTCTTGGAGAGATTCGGGAGACTGTTTTAGACCTGTTACCGCCACCAGAGCTGGTGGCAGAGCTGAAATCCAAGATGCATAGTTCTG AGATGCCTTGGCCAGGTGATGAAGGTGATAAACGCTGGGAACAAGCCTGGACGGCTATAAAGAAGGTCTGGGCTTCGAAGTGGAACGAGAGAGCATACTT CAGCACAAAGAAAATAAAGCTGGATCATGACTATCTCTGCATGGCAGTACTGGTGCAGGAAATCATAAACGCTGATTACGCGTTCGTCATCCATACTACC AATCCATCCTCCGGAGACACGTCAGAGATATATGCAGAGGTGGTCAAAGGACTCGGAGAAACTCTCGTTGGTGCTTATCCTGGCCGTGCTTTGAGTTTCA TCTGCAAGAAAAATAAGTTGGATTCTCCGCAGGTTCTGGGTTATCCCAGCAAACCAATCGGTCTCTTCATAAGACGTTCGATCATCTTTCGCTCCGACTC CAATGGCGAAGATCTTGAAGGCTATGCCGGTGCAGGCTTGTACGACAGTGTGCCAATGGACGAAGAGGAGAAAGTAGTGCTGGATTACTCGTCTGATCCA CTGATGATCGACGAGAACTTCCAGAAAACAACACTCGCAAAGATCGCAAGTGCAGGGCACGCAATCGAGGAACTCTATGGATCTGCGCAAGACATTGAAG GTGTGGTACGAGATGGCAAAATCTACGTCGTCCAGACCAGACCCCAGGTGTAA
AA sequence Show only first row Show all	>Lus10029118 pacid=23151768 polypeptide=Lus10029118 locus=Lus10029118.g ID=Lus10029118.BGIv1.0 annot-version=v1.0 MSNSISHNLFYQSLLHPKVVDHRSKSKASGVVANSSFQSASVSQAALPTLGVTTPSSCFYGGRLKTKKSKVSAGRSRPVAVTPRAVLAMEQPSELAGKFQ LDHNAELQVFISNSPTAPVTTVNIQLTYTSDSLILHWGGIHDAREKWVLPARCPDGTKNHKNRALRTPFSKAGSSSFLKLEIDDPNIQAIEFLIFDEAKN QWFKNSGQNFHVKFPPREKFISSNVSVPEELVQEEYEAARAELLEEVARGSSVEDLRAKLNSKNDRTSIKESPVSEVKSSIPEDLVQVQSYLRWERAGKP DYSTEQQLREFEEARAELQAELDRGVSLDEIRKKITKGNTHTNAGVKPKKENYVSTERIRRKSRDLIQIVTKYKADSTMEVVPAEPKSPKPIELYANAIE EQAGDTILNKKKFKLGDKEILVLVSKPGGKIKVHVVTDLEESAILHWALAKNPGEWSAPPASVLPPDSIPLKEAAETPLTKPSAELPYQVQSFQIEIEDS SFVGMPFVLLANGNWMKNNGSDFYVGFSSPAKKVQKDVGDGRGTAKTLLDRIAEMEGEAQKSFMHRFNIASDLMHQAKDAGVLGIAAIFVWKRFMATRQL IWNKNYNVKPREISQAQDRLTDMLQDIYSSYPQYREFLRLILSTVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEWHQKLHNNTSPDDVIICQALIDH ISSDFDMSVYWKTLNDNGITKERLLSYDRAIHNEPNFRRDQKDGLLRDLGSYMRTLKAVHSGADLESAIANCMGYKAEGQGFMVGVNINPVSGLPSGFPE LLQFVLKHVEDRNVEALLEGLLEARQELRPSLSQANPRLKDVLFLDIALDSAVRTAIERGYEELNDAGPEKIMYFISLVVENLALSSDDNEDLIYCLKGW NQAMKMSKRNNNWALYAKSILDRTRLALAGKAESYQDILQPSAEYLGSLLGVDQWAVEIFTEEVIRGGSAAALSSLLNRLDPVLRKTANLGSWQVICPAE AVGYIVVVDELLSVQNKTYDRPTILIAKKVKGEEEIPDGTVAVLTPDMPDVLSHVSVRARNGKVCFATCFDPNILDDLQACEGKLLRLKPTSAEIVYSEV KEDELEGPSSTSLNDVDSSSLKLVKKQFTGKYAISSDEFTSEMVGAKSRNISYLRGKVPSWIGIPTSVALPFGVFEKVLADGLNKDVEKKLQLLKEKLDT GEFGVLGEIRETVLDLLPPPELVAELKSKMHSSEMPWPGDEGDKRWEQAWTAIKKVWASKWNERAYFSTKKIKLDHDYLCMAVLVQEIINADYAFVIHTT NPSSGDTSEIYAEVVKGLGETLVGAYPGRALSFICKKNKLDSPQVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYSSDP LMIDENFQKTTLAKIASAGHAIEELYGSAQDIEGVVRDGKIYVVQTRPQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	1.7	0.9073
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	2.0	0.9353
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	2.6	0.8967
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	3.6	0.8889
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	4.5	0.8991
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	4.9	0.8970
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	6.5	0.9087
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	6.6	0.8894
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	6.7	0.8982
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	6.9	0.8912

Compare expression of checked genes

Lus10029118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.