Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013043 [exp] 266 / 3e-91 AT1G23350 40 / 2e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029119 pacid=23151653 polypeptide=Lus10029119 locus=Lus10029119.g ID=Lus10029119.BGIv1.0 annot-version=v1.0 ATGAAGGTCAACGCCGGCGATTGCTCAACGACGACCTACGTAATCGTCGTTGCGGCAACTCTCCTATCCACCCTTCCTCACCGATCCGCATCCCAGACGT CTACGGAGGTATGCAGGACGGTAACCCACAGACAGCTGTGCGACGCCTTAGTGAAGGGGTCGCCGGATGCGCTGTCAGCGACGGTGGCGGTGGCCGAGAA GCTGATCCAGATGACCAACCGGGCCAAGTCGCAGCTGGAAGCCACCACAGGTGCAAAGACCGACTCCACCCTGGCATGCATCCAGAATTACAATCTGGCC GTTCAGGACATAAGCCTGGGATTGGCCCACGTGGAGAAAGATAAGTACGCGTTCACCTCCAAGGTCAGTTCGGCCATTTCGCTTTACGGCCAGTGCGATG CTGGCGGGAAATCGGCTACTTCGCAGCTCAGCGAAAGGCTTAGTAATACCGCGAGCATGACGATGCCATCTATGAGCGGGTCAAGAAACCTTGCTCCTCC TTTGCAGGGTGGTGGTCCTGATGCTTTCAACCATACTAGTAGTAATAGTAGTAGGACGATGCTACTCAGCGCGGCGGGTGTGGTGGTGGTTGACTCTACG TACTGCGGCGACCAACCAGTGTGTACATATAATTCCGACTGCACAGAGACTTATCGGTGCAAACGACTCAAGGAGTACTACTGCAACGACTGCGGATCTT GCATATACGTATGCTTGAGTTAA
AA sequence Show only first row Show all	>Lus10029119 pacid=23151653 polypeptide=Lus10029119 locus=Lus10029119.g ID=Lus10029119.BGIv1.0 annot-version=v1.0 MKVNAGDCSTTTYVIVVAATLLSTLPHRSASQTSTEVCRTVTHRQLCDALVKGSPDALSATVAVAEKLIQMTNRAKSQLEATTGAKTDSTLACIQNYNLA VQDISLGLAHVEKDKYAFTSKVSSAISLYGQCDAGGKSATSQLSERLSNTASMTMPSMSGSRNLAPPLQGGGPDAFNHTSSNSSRTMLLSAAGVVVVDST YCGDQPVCTYNSDCTETYRCKRLKEYYCNDCGSCIYVCLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029119 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	15.4	0.7593
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	21.0	0.7028
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	27.2	0.7235
AT3G52230			unknown protein		Lus10037916 [exp]	27.7	0.7309
AT5G59050			unknown protein		Lus10001433 [exp]	30.2	0.7160
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	30.4	0.7174
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	31.6	0.7074
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	38.3	0.6738
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	41.2	0.7045
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	46.6	0.6992

Compare expression of checked genes

Lus10029119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.