Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05190 291 / 8e-101 EMB2394 embryo defective 2394, Ribosomal protein L6 family (.1) AT2G18400 75 / 2e-17 ribosomal protein L6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013041 [exp] 411 / 3e-147 AT1G05190 310 / 3e-107 embryo defective 2394, Ribosomal protein L6 family (.1) Lus10014306 [exp] 72 / 4e-16 AT2G18400 179 / 4e-60 ribosomal protein L6 family protein (.1) Lus10026015 [exp] 72 / 2e-15 AT2G18400 181 / 1e-59 ribosomal protein L6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153000 [exp] 322 / 2e-112 AT1G05190 338 / 3e-119 embryo defective 2394, Ribosomal protein L6 family (.1) Potri.002G229325 [exp] 240 / 1e-80 AT1G05190 272 / 2e-93 embryo defective 2394, Ribosomal protein L6 family (.1) Potri.002G229350 [exp] 128 / 6e-38 AT1G05190 138 / 3e-42 embryo defective 2394, Ribosomal protein L6 family (.1) Potri.007G024900 [exp] 73 / 9e-17 AT2G18400 173 / 6e-58 ribosomal protein L6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00347 [flax] [poplar] Ribosomal_L6 Ribosomal protein L6
Representative CDS sequence Show only first row Show all	>Lus10029120 pacid=23151721 polypeptide=Lus10029120 locus=Lus10029120.g ID=Lus10029120.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCCTCAATCTCGTGTTCCTTCCAAACCAGCAATCTGAGCTCTACATCATTTTGGGGTGACACGAGAGGGATTTCCTTATCTCGAACTCCGA TTCGTCGAGTGAATTTCGCCAGGACGGTTATACAATGCAAGGAGTCAAGAATAGGGAAGCAGCCAATCCCAGTCCCAGGAAATGTGACAATCAAGTTGGA AGAACAGTTTTTCTCAGTAAAAGGACCTCTAGGCGAGCTTTCGAGGTCTTACCCTTCTGAAGTCAAGCTCGTGATGGAGGATAACGGCCTCATTCGTGTC ATAAAGGCCACCGAGACCAGAAGAGCCAACCAATTCCATGGACTCTATAGGACACTTACCGACAACATGGTGGTCGGAGTATCAAAGGGGTTCGAGAAGA GGCTGCAGTTGGTCGGAGTTGGTTACCGTGGAACGCTGGAAGGGAACGAGTTGGTGTTGAATCTCGGATTCTCTCATCCGGTCAGGATGAAGATTCCTGA TAACCTGAAAGTGAAGGTGGAAGAGAACACAAGGATCATAATCAGTGGCTATGACAAGTGCGACATTGGTCTGTTTGCTGCTTCAATCAGACGGTGGAGG CCACCGGAGCCTTACAAAGGTAAGGGTGTGAGGTATGCCAATGAGGTTGTGAAGTTGAAGGAAGGCAAAGCTGGGAAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10029120 pacid=23151721 polypeptide=Lus10029120 locus=Lus10029120.g ID=Lus10029120.BGIv1.0 annot-version=v1.0 MASSSISCSFQTSNLSSTSFWGDTRGISLSRTPIRRVNFARTVIQCKESRIGKQPIPVPGNVTIKLEEQFFSVKGPLGELSRSYPSEVKLVMEDNGLIRV IKATETRRANQFHGLYRTLTDNMVVGVSKGFEKRLQLVGVGYRGTLEGNELVLNLGFSHPVRMKIPDNLKVKVEENTRIIISGYDKCDIGLFAASIRRWR PPEPYKGKGVRYANEVVKLKEGKAGKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	0	1
AT5G14910			Heavy metal transport/detoxifi...		Lus10014520 [exp]	1.0	0.9855
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	1.4	0.9855
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	3.5	0.9824
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	3.5	0.9773
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	3.9	0.9833
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	4.6	0.9796
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10013041 [exp]	4.7	0.9782
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	4.9	0.9812
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	5.0	0.9822
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	5.2	0.9785

Compare expression of checked genes

Lus10029120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.