Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26610 548 / 0 Pectin lyase-like superfamily protein (.1) AT1G10640 406 / 2e-137 Pectin lyase-like superfamily protein (.1) AT1G60590 389 / 1e-130 Pectin lyase-like superfamily protein (.1) AT5G14650 380 / 1e-128 Pectin lyase-like superfamily protein (.1) AT1G48100 328 / 9e-108 Pectin lyase-like superfamily protein (.1) AT1G56710 317 / 4e-104 Pectin lyase-like superfamily protein (.1) AT4G01890 295 / 7e-95 Pectin lyase-like superfamily protein (.1) AT1G70500 292 / 6e-94 Pectin lyase-like superfamily protein (.1) AT1G02460 291 / 4e-93 Pectin lyase-like superfamily protein (.1) AT1G23460 287 / 5e-92 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030886 [exp] 412 / 1e-139 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 410 / 7e-139 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 408 / 6e-138 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 400 / 2e-135 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 305 / 1e-98 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 305 / 1e-98 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 303 / 9e-98 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 298 / 8e-96 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 288 / 8e-92 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188300 [exp] 625 / 0 AT3G26610 545 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 609 / 0 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 410 / 3e-139 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 396 / 4e-134 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 393 / 2e-132 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 325 / 2e-106 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 322 / 1e-105 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 323 / 4e-105 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 321 / 6e-105 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 320 / 2e-104 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10029121 pacid=23151841 polypeptide=Lus10029121 locus=Lus10029121.g ID=Lus10029121.BGIv1.0 annot-version=v1.0 ATGTTCACGAACAGGACAAATTCATCACCTCTGTTCTCTCTGTTATTTCTCATAACAACAATCCTTCTCTTCACTGTGTTCTCCACAACTCCACTTGTTG ATGCAAGAAAGCATCACAACCATAGCAAACACTCCAAACACAGAAGTGGCAGCAGCAGTAGCATCAGCATCAATCCACCAGCAGACTTAGCTCCATATTC TCCAACTCACTCCACCACTTTCGACATTCTCTCCTTCGGAGCACGAGGCGATGGCTCCACCGATGATTCCAAGGCACTTGGAGCAGCATGGACAGCAGCT TGCCAGGTATCTGGAGCAAGAATCCAGATTCCTTCAGGATTCAAGTTCTTGATCAACCCAATATCTTTCCAAGGTCCATGCATACCTAACCTAATTCTTC AAGTGGATGGGACACTACTAGCTCCTCCACAAGTGGGTCAGTGGCCAAAATCAAGCTTGTTCCAATGGCTGAACTTCAAGTGGGTCCATAACTTCACCAT CCAAGGAAGTGGAACACTTGATGGCCAAGGCTCTCAGTGGTGGACTCCCTCTTCACTCTACTTCATTCAGAAGATGTCCAGATACATTCCAGACATGAAG CCAACGGCTTTGAGATTTTATTCGAGCTATGGTGTGACGGTCCGAGACATAACAATCACGAACAGCCCTCAGTGCCATCTGAAGTTCGACTTCTCCAAAG GAATCAAAGTCGACAACATCACGATCTTGTCGCCTGAATACAGCCCGAACACCGACGGTATTCACCTCCAGAGCACACAGGATGCAGAAATCCACCATTC TAACATTGGATGTGGAGATGACTGTGTTTCCATCCAAACTGGCTGCTCCAACATCCACCTCCACCATATTAACTGCAGCCCAGGACATGGAATAAGTCTT GGGAGCCTTGGGAAGGGGAGAACAGCTGCATGTGTCTCCAATATTGTTGTTGACAACATCTCACTTCAGAACACTCTGGCCGGTGTTCGGATTAAGACAT GGCAGGGAGGAGTGGGATCAGTGAAGAACATAACATTCTCAAACATCCAAGTATCACAAGTGAAGTACCCGATCATCATAGACCAATTCTACTGCGACAA GCACACCTGCCGGAACCAGACCGAGTCTGTGGCCATTTCGGGAGTGAGATATGACCGAATCATCGGCACATACTCTGTTCAGCCGATTCACCTTGCTTGT AGCTCTACAGTGCCGTGCGTGGACGTTGATTTGGTGAACATCCAGCTTAAGCCGTCTGAACCATCGATGTCGTCGTCGTTAGCCATCGGATCAGGAGGGT TATTTCAGCAGGGTTTGTGCCAGAACTCGTACGGAAAATCGGAAGGTCCGTTGGTTCCTTCGAGTATCGATTACTGTTTGAGAAAGGGGAGTGATTATGT AAAGCGGATAGCAAGGTCACATGAACATGCAGTCTGTTGA
AA sequence Show only first row Show all	>Lus10029121 pacid=23151841 polypeptide=Lus10029121 locus=Lus10029121.g ID=Lus10029121.BGIv1.0 annot-version=v1.0 MFTNRTNSSPLFSLLFLITTILLFTVFSTTPLVDARKHHNHSKHSKHRSGSSSSISINPPADLAPYSPTHSTTFDILSFGARGDGSTDDSKALGAAWTAA CQVSGARIQIPSGFKFLINPISFQGPCIPNLILQVDGTLLAPPQVGQWPKSSLFQWLNFKWVHNFTIQGSGTLDGQGSQWWTPSSLYFIQKMSRYIPDMK PTALRFYSSYGVTVRDITITNSPQCHLKFDFSKGIKVDNITILSPEYSPNTDGIHLQSTQDAEIHHSNIGCGDDCVSIQTGCSNIHLHHINCSPGHGISL GSLGKGRTAACVSNIVVDNISLQNTLAGVRIKTWQGGVGSVKNITFSNIQVSQVKYPIIIDQFYCDKHTCRNQTESVAISGVRYDRIIGTYSVQPIHLAC SSTVPCVDVDLVNIQLKPSEPSMSSSLAIGSGGLFQQGLCQNSYGKSEGPLVPSSIDYCLRKGSDYVKRIARSHEHAVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26610			Pectin lyase-like superfamily ...		Lus10029121 [exp]	0	1
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10040193 [exp]	8.0	0.7541
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001738 [exp]	12.7	0.7760
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	43.7	0.7173
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10033155 [exp]	51.7	0.6975
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	84.9	0.7053
AT2G31690			alpha/beta-Hydrolases superfam...		Lus10026735 [exp]	109.8	0.6505
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	124.9	0.6492
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	145.8	0.6408
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	253.2	0.6385

Compare expression of checked genes

Lus10029121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.