Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70530 745 / 0 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 503 / 4e-171 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70520 457 / 3e-153 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G19090 409 / 3e-135 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G28670 368 / 7e-119 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G11480 307 / 3e-95 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1) AT4G05200 305 / 2e-94 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT1G16670 294 / 1e-93 Protein kinase superfamily protein (.1) AT4G38830 300 / 1e-92 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT3G09010 280 / 4e-88 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013040 [exp] 1197 / 0 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029123 [exp] 466 / 1e-156 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 451 / 3e-151 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 448 / 2e-149 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 366 / 2e-121 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010960 [exp] 362 / 4e-117 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10031582 [exp] 309 / 6e-96 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10042460 [exp] 293 / 4e-93 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 293 / 7e-93 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043900 [exp] 867 / 0 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.001G348000 [exp] 517 / 3e-176 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.012G087000 [exp] 501 / 1e-169 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043800 [exp] 444 / 4e-148 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 443 / 8e-148 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 381 / 8e-124 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.001G276600 [exp] 365 / 9e-118 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.004G024140 [exp] 318 / 4e-99 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023876 [exp] 311 / 9e-97 AT4G23180 489 / 5e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G438400 [exp] 297 / 1e-94 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10029122 pacid=23151773 polypeptide=Lus10029122 locus=Lus10029122.g ID=Lus10029122.BGIv1.0 annot-version=v1.0 ATGGGCTCTTACTTCTTCTTCCGCCATGGCTATCTCCTCGTTTTCCTCCTCTCCTTCCCATACCTCTCCCTCGCTGATCCCCGGGCGACGGAGGCGGCTC TGGTCTGCCAGAACAGGACAGCCGCCCCGGAATTCCGGCAGACCTTCGTCGCCAACTTCCTGGCGGCGCTAGACGGCATGAACGCTCTCATCGCCGGCCA GGGATACGCCGCCGGGGTCACCGGCACGGGAAACGCCACCGTCTACGCCTTCGGGGAATGCATGAAGGACCTCGATGAAAACGATTGCAACGTATGCTTC GCCCAGTGCAAGACCCAGATCCTCCGCTGCCTCCCCTTCCAGCGTGGCGTCCGCGGCGGCCGCCTCTTCTTCGACGGCTGCTACCTGAGGTACGACGATT ACAACTTCTTCAACGAGAGCTCTAGTGTGCAAGACCGCGTAGTGTGTGCGCTAGGGAATACGAATTTCACCGGCGGAGATTTGGCGGTTTTCGGCGCCAA TGCGATTTCCTTGGTGAGGAATTTAAGCGAACAGGTGGTGGGCAACAATGACGGATTCGCCGTAGGGTCGATAATTAGCGGAAACGTCTCGGTTTTCGGA TTGGCGCAGTGCTGGGAGTTCGTCAGCGGTGGGGATTGCCGGAGTTGTTTGGCGGATGCGGTTGAAATGATCGGAAATTGTACTCCCAGGGAAGAAGGTA GGGTTCTGAAAGCTGGATGCTACATGAGGTATTCTCCTCAAAGGTTCTACAATATTTCCAGCTCATCACCGTCTTCTGGAAATGGAGGGGGGGATAAGAA CTTGGCTGTGATCTTGGCTGCAACTTTTGCATCTCTGGCTGCTGTGCTGATTGTTACTGCTGTAATTTTAGTTGCGAGGAAAAGGATTCGCAAAAGGAGA ACTCAGAGGAAGGAACTTGGAGCAATGTTACTTACTGTTAACAAATCCAGGCTGAATTACTCGTACGAATCGCTCGAGAGGGCTACGGATTACTTCCACC GATCGAACAAGCTGGGGCAAGGTGGATCTGGATCGGTTTACAAGGGAGTGCTGGCTGATGGGAAAACAGTAGCTGTAAAGAGGCTGTTCTTCAATACAAG GCAATGGGTGGATCATTTCTTCAATGAAGTGAACTTGATCAGTGGGATTCAGCACAAGAACCTTGTTAAGTTGCTGGGTTGCAGCATCACTGGTCCCGAA AGCCTCTTGGTTTACGAATATATCCCGAATCTAAGCCTATATGATTACCTCGACGTGGATTCAGAAAACAGGAATGTCCAGCCATTGACATGGGAGAGGA GATTTAATATCATACTAGGAACAGCAGAAGGTCTAGCCTTTCTTCATGAGGAATCGGAGTTGAGAATCATACATCGAGACATCAAACTAAGCAACATTCT GCTGGACGAGGATTACACCGCCAGGATTGCAGATTTCGGACTTGCTAGAATGTTCCCCGAAGACCAGACTCATATAAGCACAGCAGTTGCAGGCACATTA GGTTACATGGCTCCGGAATATGTGGTTCGAGGCAAGCTGACGGAGAAGGCAGACGTTTACAGCTTCGGAGTGGTGGTGATCGAAGTCGTCACAGGAAGGA AAAACAACTCCTTTTCAAGAAACCCACATTCGATCCTCCAGACAGTGTGGAATTCTTACGGAACCGGCCAACTCTGTGAAGCAGTTGATCCAGCTCTAAA TGACAATTTTCGGCAAGAGGAAGCTGTCCGATTGCTCAAGATCGGGCTGCTATGCGCGCAGGCTTCGGCAGATCTACGGCCTGCTATGTCACTAGTAGTG AAAATGGTGGTGGGTGATCTTGAAATCCCACTCCCAACACAGCCCCCATTTCTAAACTGTAATCAGCAGCAGAGTAAGAAGTTGGTTAGACCAGCTGGTG CCACTTCTGAGTCGTACAGCCAGTCTTCTGGGAATGACATGACTCAGAGCTGGATCGAACCGAGATGA
AA sequence Show only first row Show all	>Lus10029122 pacid=23151773 polypeptide=Lus10029122 locus=Lus10029122.g ID=Lus10029122.BGIv1.0 annot-version=v1.0 MGSYFFFRHGYLLVFLLSFPYLSLADPRATEAALVCQNRTAAPEFRQTFVANFLAALDGMNALIAGQGYAAGVTGTGNATVYAFGECMKDLDENDCNVCF AQCKTQILRCLPFQRGVRGGRLFFDGCYLRYDDYNFFNESSSVQDRVVCALGNTNFTGGDLAVFGANAISLVRNLSEQVVGNNDGFAVGSIISGNVSVFG LAQCWEFVSGGDCRSCLADAVEMIGNCTPREEGRVLKAGCYMRYSPQRFYNISSSSPSSGNGGGDKNLAVILAATFASLAAVLIVTAVILVARKRIRKRR TQRKELGAMLLTVNKSRLNYSYESLERATDYFHRSNKLGQGGSGSVYKGVLADGKTVAVKRLFFNTRQWVDHFFNEVNLISGIQHKNLVKLLGCSITGPE SLLVYEYIPNLSLYDYLDVDSENRNVQPLTWERRFNIILGTAEGLAFLHEESELRIIHRDIKLSNILLDEDYTARIADFGLARMFPEDQTHISTAVAGTL GYMAPEYVVRGKLTEKADVYSFGVVVIEVVTGRKNNSFSRNPHSILQTVWNSYGTGQLCEAVDPALNDNFRQEEAVRLLKIGLLCAQASADLRPAMSLVV KMVVGDLEIPLPTQPPFLNCNQQQSKKLVRPAGATSESYSQSSGNDMTQSWIEPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	4.9	0.8546
AT5G38260			Protein kinase superfamily pro...		Lus10025554 [exp]	5.2	0.8519
AT4G34150			Calcium-dependent lipid-bindin...		Lus10019826 [exp]	5.9	0.8561
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	7.5	0.8813
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	8.9	0.8468
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	9.6	0.8609
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	10.2	0.8219
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	10.7	0.8630
AT5G25930			Protein kinase family protein ...		Lus10012949 [exp]	10.9	0.8535
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	17.3	0.8136

Compare expression of checked genes

Lus10029122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.