Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 806 / 0 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G70530 477 / 5e-161 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 469 / 9e-158 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT4G28670 429 / 8e-143 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT1G19090 387 / 8e-127 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G21410 306 / 1e-94 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23140 306 / 1e-94 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23230 301 / 1e-94 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G05200 305 / 4e-94 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G38830 304 / 4e-94 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013039 [exp] 1045 / 0 AT1G70520 699 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 982 / 0 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 957 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 473 / 4e-159 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 456 / 7e-153 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10010960 [exp] 333 / 5e-106 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 320 / 1e-103 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10018382 [exp] 320 / 5e-100 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10038940 [exp] 300 / 1e-95 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 930 / 0 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 919 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 503 / 2e-171 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.010G043900 [exp] 487 / 5e-165 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.001G348000 [exp] 481 / 2e-162 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.012G087000 [exp] 467 / 1e-156 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 399 / 3e-130 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 389 / 4e-127 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.017G141300 [exp] 385 / 2e-124 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.004G025200 [exp] 325 / 6e-102 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10029123 pacid=23151676 polypeptide=Lus10029123 locus=Lus10029123.g ID=Lus10029123.BGIv1.0 annot-version=v1.0 ATGGTGATGATCACCATCTTCGTCCTCATCCTCCTTCAATGTCAGCAGCCAGCACTATCCGACCCGAGAGCTCAGACAGTAAACGTCACCTGCGACACAG AACTGGAAGCCAACCCGGCAATCTTCGTCCCGAACTTCGTCGCGACAATGGAGAACATTAGCGACCAGATGAGGGTCTCAGGTTTCGGATCGGCCGAAGC AGGGGAACCGGGACCCAATAAGAACTACGGCCTGGCTCAGTGCTACGGGGACCTTTCGTTGCTTGATTGCGTGCTCTGTTACGCTGAGGCGCGCACGATT CTGCCGCAGTGCTACCCTTTCAACGGCGGGAGGATCTTCCTCGACGGGTGCTTCATGAGGGCGGAGAACTACAGCTTCTTCGATCAGTATTTGGGGCCTC AGGACAGAGCCGTCTGCGGAAATGCGACGAATCCTAAGACGAATTTGTCGACGAATGCGTTTCAGAATTCGGTCAGGCAAGGGTTGCAGCAGGCGGTGGC GAATGCGCCTACGAATGGCGGCTTTTGGAGGGGCGAGGTTGGGGTCTGGGGAGGCACGGTGACTTCATCGGTTTTCGTGCTGGCGAATTGCTGGAGGACG CTGAATTCAAGCTCGTGCAGGTCGTGTTTGGAGAACGCTTCGAGTTCTGTGGCCGGTTGCTTGCCGAGGAACGAAGGGAGAGCTTTGAATACCGGGTGTT TCCTGAGGTATTCCGACAAGAATTTCCTGAACGATGTTGCGCGAAATGGAAGTTCCGGAGTGCCGGTTTTCGTGATAGTGGTTTCGGTTGTTAGCTGTGT TCTGGTTCTGGTAGTTGGTGGAGCCATTGGAGGCTACATTTGGAAGCATAGATACATAGAGAAGAAGAGAAGAGGTTCTAATGATGTGCATAAGTTGGTG AAGACCTTGAATGACAGCAGCTTGAACTTCAAATACTCGACTCTCGAGAAGGCTACAGGATCATTCGACGAAGCTAACAAGCTCGGACAAGGAGGGTTTG GTTCTGTCTACAAGGGAGTTCTGCCTGATGGAAGGGAGATAGCAGTGAAGAGGCTGTTCTTCAACAACAAACACAGAGTTGCCGATTTCTTCAACGAGGT CAACATGATTAGCACCGTTGAGCATAAGAACCTCGTCAGGTTGTTAGGTTGCAGCTGTTCCGGTCCGGAGAGCCTCCTCGTGTACGAATTTCTGCACAAC AGAAGCCTCGATTCCTACATCTTCGATGCGAACAAGGGCAAGGCAATGACGTGGGACAAGAGGTACGAGGTGATCGTGGGGACAGCGGAAGGTCTGGTGT ATCTCCACGAGAATTCGAAAATCAGGATCATCCACAGGGACATCAAGGCCAGCAACATTCTGTTGGATTCGAGACTTCGAGCTAAGATTGCTGATTTCGG GCTGGCAAGGTCCTTCCAGGAAGATAAGAGTCATATAAGCACAGCAATTGCAGGAACACTTGGATACATGGCTCCTGAGTATCTGGCGCACGGGCAGTTG ACCGAGAAGGCGGATGTTTATAGTTTCGGGGTATTGCTGCTCGAGATTGTCACAGGACGGCAGAACAATAGAAGCAAAAGCTCTGAATATACAGACAGCT TAGTCACATTGATGTGGAGGCAATTCCAGGAAGGAAGCGTGTACGAACTGTTCGATCCGAACTTGATGCTGCAGAATCACCACAACAGCAACGTGAAAGA CGACGTCTTGCGAGTTGTCCATGTGGCGCTTTTATGTGCCCAAGAGAGTCCATCGATTAGACCTTCGATGTCCAGTGTGCTGCAGATGCTAACTAGTGAA GAACTGCTGCCTCCACCGACGAATCCACCTTTCATCGACGAGAGGACCATGGAAATGGGTGATGGAGGATGCGAGGATCCGTCTTTTCCCCTCAATATAG GGCTTTCGGAATCGGTTGCAACCGTTGATCACAGTTCTTTCCACCCTAGATGA
AA sequence Show only first row Show all	>Lus10029123 pacid=23151676 polypeptide=Lus10029123 locus=Lus10029123.g ID=Lus10029123.BGIv1.0 annot-version=v1.0 MVMITIFVLILLQCQQPALSDPRAQTVNVTCDTELEANPAIFVPNFVATMENISDQMRVSGFGSAEAGEPGPNKNYGLAQCYGDLSLLDCVLCYAEARTI LPQCYPFNGGRIFLDGCFMRAENYSFFDQYLGPQDRAVCGNATNPKTNLSTNAFQNSVRQGLQQAVANAPTNGGFWRGEVGVWGGTVTSSVFVLANCWRT LNSSSCRSCLENASSSVAGCLPRNEGRALNTGCFLRYSDKNFLNDVARNGSSGVPVFVIVVSVVSCVLVLVVGGAIGGYIWKHRYIEKKRRGSNDVHKLV KTLNDSSLNFKYSTLEKATGSFDEANKLGQGGFGSVYKGVLPDGREIAVKRLFFNNKHRVADFFNEVNMISTVEHKNLVRLLGCSCSGPESLLVYEFLHN RSLDSYIFDANKGKAMTWDKRYEVIVGTAEGLVYLHENSKIRIIHRDIKASNILLDSRLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQL TEKADVYSFGVLLLEIVTGRQNNRSKSSEYTDSLVTLMWRQFQEGSVYELFDPNLMLQNHHNSNVKDDVLRVVHVALLCAQESPSIRPSMSSVLQMLTSE ELLPPPTNPPFIDERTMEMGDGGCEDPSFPLNIGLSESVATVDHSSFHPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	0	1
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	2.2	0.8996
AT4G21865			unknown protein		Lus10023724 [exp]	8.5	0.8447
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	8.9	0.8401
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	11.7	0.8595
AT1G25400			unknown protein		Lus10034335 [exp]	14.1	0.8235
AT4G28290			unknown protein		Lus10018592 [exp]	17.7	0.8233
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	18.6	0.8287
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	19.8	0.8279
AT4G21215			unknown protein		Lus10018373 [exp]	22.3	0.8243
					Lus10022051 [exp]	24.2	0.7600

Compare expression of checked genes

Lus10029123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.