Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23360 298 / 6e-102 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G57300 71 / 4e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G54400 61 / 2e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G18000 59 / 8e-10 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G15530 57 / 4e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 56 / 1e-08 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G41040 54 / 6e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 51 / 5e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 49 / 1e-06 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT3G63410 46 / 2e-05 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013038 [exp] 433 / 5e-155 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011441 [exp] 75 / 2e-15 AT5G57300 475 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000179 [exp] 74 / 2e-15 AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037553 [exp] 73 / 7e-15 AT5G57300 359 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10038599 [exp] 65 / 8e-12 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037890 [exp] 65 / 9e-12 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 53 / 1e-07 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 52 / 3e-07 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 51 / 4e-07 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188600 [exp] 347 / 6e-121 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.018G088400 [exp] 71 / 5e-14 AT5G57300 470 / 4e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.011G128300 [exp] 66 / 6e-12 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G043601 [exp] 59 / 2e-11 AT1G23360 63 / 9e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G405200 [exp] 61 / 1e-10 AT5G54400 396 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G047400 [exp] 54 / 4e-08 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 54 / 6e-08 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G060400 [exp] 50 / 6e-07 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G120000 [exp] 50 / 8e-07 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 46 / 1e-05 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01209 [flax] [poplar] Ubie_methyltran ubiE/COQ5 methyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10029124 pacid=23151828 polypeptide=Lus10029124 locus=Lus10029124.g ID=Lus10029124.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTCAATTCAGATTCTCATCCTCTTCCTTCGCCGTCCGGCCAACATCCCACCTCCGACGCCCGACTGCACGCTGCTCCGACGACCGGAAGG CACTCTTCAACCGCATTGCTCCCGTTTACGACAATAACTTCCTTCTTGTGGATAATAAAGTTGGGTTATTTTTTCATGGAGGTAGAGCTAAGACTGGGGA TTCTGTTCTTGATATATGCTGTGGAAGTGGTGACTTGACGTTTCTCTTGTCCGAGAAAGTTGGTTCTTCCGGCAAGGTGATAGGACTTGATTTCTCCAAA GAGCAGCTGGTTGTGGCTTCGTCTCGGCAGAACTCCCGGTGGAAGTCCTGCTATCATAGCATAGAATGGTTAGAAGGCGACGCTACGGATTTGCCATTCT CAGATCGTCAGTTCGATGCCATCACCATGGGGTATGGGCTGAGAAATGTGGTTGACAAAGACAAGGCGATGCGGGAGATGTTTCGAGTACTGAAACCAGG AGGGAAAGCATCAATTCTCGACTTCAACAAGACAACCCAACCATTTGTTGCCTCCTTTCAGGAGTGGATGATCGACAATGTCGTTGTTCCCGTGGCAACG GGCTATGGTCTTGCAGATGAGTACGAATACTTGAAGAGCTCCATTAGAGAATTCTTAACTGGTTTGAGCTCTTTTTCTACTTCAAACATCATCATTCATT TGTTTCACTTGTCCCTTCTCGGTCTTACAGTGAAGACAGTTGAGTTGAGTAAAGATTCGGTCTGTGTAGGGCAGGAGCTAGAAGAACTTGCTATGGACGC TGGTTTCTCCAACGCCACACATTATGAGATCAGTGGGGGGTTGATGGGGAATCTAGTTGCAACTCGTTAG
AA sequence Show only first row Show all	>Lus10029124 pacid=23151828 polypeptide=Lus10029124 locus=Lus10029124.g ID=Lus10029124.BGIv1.0 annot-version=v1.0 MASLQFRFSSSSFAVRPTSHLRRPTARCSDDRKALFNRIAPVYDNNFLLVDNKVGLFFHGGRAKTGDSVLDICCGSGDLTFLLSEKVGSSGKVIGLDFSK EQLVVASSRQNSRWKSCYHSIEWLEGDATDLPFSDRQFDAITMGYGLRNVVDKDKAMREMFRVLKPGGKASILDFNKTTQPFVASFQEWMIDNVVVPVAT GYGLADEYEYLKSSIREFLTGLSSFSTSNIIIHLFHLSLLGLTVKTVELSKDSVCVGQELEELAMDAGFSNATHYEISGGLMGNLVATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	0	1
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	3.0	0.9450
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	3.5	0.9499
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	5.1	0.9479
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	5.7	0.9376
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	9.2	0.9373
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	10.4	0.9344
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	11.0	0.8904
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Lus10009197 [exp]	14.3	0.9259
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	15.0	0.9227
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	15.2	0.8728

Compare expression of checked genes

Lus10029124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.