Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23380 368 / 9e-128 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 331 / 2e-113 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT4G08150 216 / 2e-67 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 211 / 1e-65 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT1G62990 100 / 2e-24 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G11060 100 / 6e-24 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 97 / 1e-22 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT5G25220 97 / 3e-22 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT1G75430 62 / 9e-11 HD BLH11 BEL1-like homeodomain 11 (.1) AT1G14760 59 / 1e-10 KNATM KNOX Arabidopsis thaliana meinox (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013037 [exp] 586 / 0 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 191 / 1e-57 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 190 / 2e-57 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 182 / 3e-55 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10007245 [exp] 128 / 4e-36 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10042103 [exp] 111 / 7e-30 AT1G70510 125 / 1e-35 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) Lus10042102 [exp] 105 / 1e-27 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001941 [exp] 89 / 1e-19 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 84 / 7e-18 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043500 [exp] 423 / 8e-150 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 419 / 3e-148 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 318 / 9e-108 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 313 / 7e-106 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 236 / 3e-76 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 235 / 1e-75 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.002G113300 [exp] 226 / 1e-71 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.011G011101 [exp] 216 / 1e-67 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 216 / 2e-67 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 205 / 2e-63 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain CL0123 [flax] [poplar] PF03791 [flax] [poplar] KNOX2 KNOX2 domain
Representative CDS sequence Show only first row Show all	>Lus10029125 pacid=23151738 polypeptide=Lus10029125 locus=Lus10029125.g ID=Lus10029125.BGIv1.0 annot-version=v1.0 ATGGATGGAATGTACGGTTTACACTCGACGACGGCGGACTACTCGGATAAGGCTCTGATGTCGCCCGAGAATCTCATCCTCCCTTCCGATTACCAGAGCT TCATCGCCTCCACCGACTCCTTCCGCTATCGCAACCACCATAGCAGCGGCACCCCGAGCGGAATCCCTATATTCGGATCCGATGAGCTGTCAGTGATTTC GTCGGAGGCTGTTTCCATTACTCCTTCTCATCATCATCATCACCGGGAGGAAGACTTCACATCTCTAATCAAGGCGAAAATCGCCTCGCATCCTTCGTAT CCTCGGTTGCTGGACGCTTATATCGACTGCCAGAAGGTAGGAGCTCCACCGGAGATCGCGAGTTTTCTCGACGAAATCCGCCGCGAGAACGATGTTTGCA GGAGAGACACTGGCTCTTGCTTCGGACCTGATCCTGAGCTCGACGAGTTCATGGAAACGTACTGCGACGTGTTGGCGAAGTATAAATCAGATCTGGAGCG GCCGTTCGATGAGGCGACGAGCTTCTTGAACAACATCGAAATTCAGCTGCGTAATCTTTGCACTGGCGCCTCAATCCGAAGAAGCTTATCCGACGAAGGT GCAGTATCGTCCGAGGATGAAGTGAGCGGAGGAGAAGCTGACGGGCTCGAAGCTCAACCGAGCAGCGAAGACCGGGACCTTAAGGACAGACTTCTACGGA GGTTCGGAAGCCACATCAGCTCACTGAAACTGGAGTTCTCAAAGAAGAAGAAGAAAGGGAAGCTACCAAAGGAAGCAAGGCAGACCTTACTCGAGTGGTG GAATGTTCACTACAAATGGCCCTATCCCACTGAGGCTGATAAGATGGCGTTGGCGGAATCGACGGGGCTGGATCAGAAGCAGATAAACAACTGGTTCATA AACCAACGGAAGCGGCATTGGAAGCCATCGGAGAACATGCAGTTCGGACTCATGGACAGTCTCTCTGGCCAGTTCTATACAGATGATTAG
AA sequence Show only first row Show all	>Lus10029125 pacid=23151738 polypeptide=Lus10029125 locus=Lus10029125.g ID=Lus10029125.BGIv1.0 annot-version=v1.0 MDGMYGLHSTTADYSDKALMSPENLILPSDYQSFIASTDSFRYRNHHSSGTPSGIPIFGSDELSVISSEAVSITPSHHHHHREEDFTSLIKAKIASHPSY PRLLDAYIDCQKVGAPPEIASFLDEIRRENDVCRRDTGSCFGPDPELDEFMETYCDVLAKYKSDLERPFDEATSFLNNIEIQLRNLCTGASIRRSLSDEG AVSSEDEVSGGEADGLEAQPSSEDRDLKDRLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKMALAESTGLDQKQINNWFI NQRKRHWKPSENMQFGLMDSLSGQFYTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	1.7	0.8682
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	3.0	0.8355
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	3.5	0.8605
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	5.7	0.8375
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	5.9	0.8437
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	6.2	0.8482
AT4G17540			unknown protein		Lus10004359 [exp]	6.9	0.8419
AT1G76660			unknown protein		Lus10025171 [exp]	8.5	0.8466
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	9.2	0.8003
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	9.5	0.8179

Compare expression of checked genes

Lus10029125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.