Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60790 526 / 0 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 419 / 1e-140 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 404 / 2e-135 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G49340 382 / 3e-128 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 353 / 1e-116 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 348 / 5e-115 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 304 / 5e-98 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 295 / 1e-94 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 265 / 4e-84 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT5G58600 262 / 2e-82 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013035 [exp] 957 / 0 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10030900 [exp] 425 / 2e-148 AT1G60790 371 / 2e-127 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10021066 [exp] 411 / 1e-137 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 358 / 3e-119 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 355 / 9e-118 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10002430 [exp] 328 / 7e-107 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10037726 [exp] 326 / 2e-106 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10003734 [exp] 295 / 1e-94 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034039 [exp] 288 / 7e-92 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043300 [exp] 616 / 0 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 419 / 2e-140 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 410 / 2e-137 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 384 / 7e-128 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.T171301 [exp] 381 / 7e-128 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 380 / 1e-127 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.018G133000 [exp] 376 / 2e-125 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G071500 [exp] 370 / 2e-123 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 346 / 5e-113 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 289 / 3e-92 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10029126 pacid=23151722 polypeptide=Lus10029126 locus=Lus10029126.g ID=Lus10029126.BGIv1.0 annot-version=v1.0 ATGGTGGTTCAAGCTATGGACGCGAAGAAATTCGGATTACCAGAGCAACTCCATCTCTCCCCGACGAAGAAGCTCCTATCTGGGTTCACTCTCTGGATCG CCAGCGCCTTCTTCCTCGTTGCATCGGTGCTCCTCCTCAGCAACACCACCAAAGGTCGCTTCGTGTTCCAAGGGTTTAACAAAGTCGGTGTGAATTCATC TCTCGCTTCTTCCTGGCCATTCTCGCTTCCTGATTCTTACTACCCTAGCAGAGACAGCAGCAACAACAACGCTTCCGCAGCTGCGTTTGGGGTTGTTTTG GGGAAAGTGAACCTAGGAAATTCGAGTGAAGAAGAGGGGAGTTGGGATGGGATTCGAGATGATCTTACAAGTGTTCGACCAAATGCCTCAGTGGCTGGAA AAATCGAGAATCTGACTGATTCGGTTGGGGTTTCGGCCAATGGAAGCTTGCCGGTTGGAGAACCAGACTCCTCTGAGATTTCTGTTAAAGCTAATTTGAC TGGTGGAGGGGAATTGGTTGCTACTAGTAACGAAAAGGAAGCTAACTTGTCCAGTAGTGGGATTGCAGAGGCGAGTAAGCAAACAACGGAAGCTTCTTAC GAGAATTGTGATGTATTTGATGGAAGGTGGGAGTGGGATAACTCCAAGCCTTATTATCCAGCAGGGTCGTGTCCTCATATCGATAGGGATTTCAACTGTC ATGCAAATGGAAGGCCTGATTCTGGATTTGTTAAATGGAGGTGGCAGCCAAATGGGTGCAACATACCAAGGTTGAATGCCACTGATTTTCTAGAGAGATT AAGAGGGAAGAAGCTGGTTTTCGTAGGGGATTCTCTGAACAGAAACATGTGGGAATCCTTGGACTATAACTGTACCGTTGATTTCGTCGGCTCTCCTTTC CTTGTAAGAGAATCATCGTTCTCCAGTGCGAACGGTACATTTGAGACGTTAAGGTTGGATTTGATGGACAAGACGACTTCAATGTACCATGATGCTGATG TAATAGTTTTCAACACCGGTCACTGGTGGACTCACGAGAAAACCTCTAAAGGAGAAGACTATTACCAGGAAGGCAATCATGTCCATGCAAGGCTCAAAGT GTTAGACGCATATAGGAGAGCACTCAAAACATGGGCCAGATGGGTTGATAGGAGCATAGACAGAAACAGAACTCACGTCTTCTTCAGAGGCTACTCAGTA ACCCATTTCAAAGGTGGCCAGTGGAACTCAGGAGGTCAATGCCACAAAGAAACCGAACCCATCTTCAATAAAACTTACTTATCCAAGTACCCATCAAAGA TGAAAATCCTGGAGAACGTGCTTCACGAGATGAAAACTCCAGTCACTTACCTAAACATTAGCAGACTCACGGATCACAGAAAAGACGGCCACCCATCGAT CTACAGGATGAAGTATAAAACAAATGTGGAACGTTCCGCGGCTGAACGAGCTCAGGATTGTAGCCACTGGTGCCTTCCAGGGGTCCCAGATACTTGGAAC GAACTGCTCTATGCATCGTTCGTAAAGTCTGGGATTGGATCCTGGAAGAAATGA
AA sequence Show only first row Show all	>Lus10029126 pacid=23151722 polypeptide=Lus10029126 locus=Lus10029126.g ID=Lus10029126.BGIv1.0 annot-version=v1.0 MVVQAMDAKKFGLPEQLHLSPTKKLLSGFTLWIASAFFLVASVLLLSNTTKGRFVFQGFNKVGVNSSLASSWPFSLPDSYYPSRDSSNNNASAAAFGVVL GKVNLGNSSEEEGSWDGIRDDLTSVRPNASVAGKIENLTDSVGVSANGSLPVGEPDSSEISVKANLTGGGELVATSNEKEANLSSSGIAEASKQTTEASY ENCDVFDGRWEWDNSKPYYPAGSCPHIDRDFNCHANGRPDSGFVKWRWQPNGCNIPRLNATDFLERLRGKKLVFVGDSLNRNMWESLDYNCTVDFVGSPF LVRESSFSSANGTFETLRLDLMDKTTSMYHDADVIVFNTGHWWTHEKTSKGEDYYQEGNHVHARLKVLDAYRRALKTWARWVDRSIDRNRTHVFFRGYSV THFKGGQWNSGGQCHKETEPIFNKTYLSKYPSKMKILENVLHEMKTPVTYLNISRLTDHRKDGHPSIYRMKYKTNVERSAAERAQDCSHWCLPGVPDTWN ELLYASFVKSGIGSWKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	0	1
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	1.4	0.8983
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	2.4	0.9032
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	3.2	0.8808
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	3.9	0.8929
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	4.0	0.8817
AT1G70260			nodulin MtN21 /EamA-like trans...		Lus10010696 [exp]	4.5	0.8412
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	5.5	0.8520
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	9.2	0.8565
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	9.5	0.8798
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	10.0	0.8616

Compare expression of checked genes

Lus10029126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.