Plant FIBer expression Database

Lus10029127 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23390 58 / 4e-10 Kelch repeat-containing F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013034
[exp]
173 / 3e-56 ND /
Lus10013033
[exp]
68 / 5e-14 AT1G23390 226 / 1e-72 Kelch repeat-containing F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G042900
[exp]
77 / 9e-17 AT1G23390 248 / 2e-78 Kelch repeat-containing F-box family protein (.1)
PFAM info
Representative CDS sequence
>Lus10029127 pacid=23151839 polypeptide=Lus10029127 locus=Lus10029127.g ID=Lus10029127.BGIv1.0 annot-version=v1.0
ATGTATGTGGCGGAGAGGAGTACCGGAGTCGGGTACGGGTTCCAGCCCGATACAGCGATATGGAGCGGGCCGTACGACGTACGGCCCCGCGGCGGAGTAG
TTTGCGCCTCCGCGCTTGGGATGGCCGGCGGGAGGTTGATTTTGGCCGGATTGATCTCCGACCAATCGGACGAGAGTCAGAAGGTGAAGGGGATGAAGCT
GTGGGAGCTTGACGGCGAGACGATGCAGTGCGGCGGGGAAATTTCGGAACTCCCCGCAGAGTATTTGAAGCTGCTGGAGGTGGAATTTGGTAGTTTGTCG
TCAGTGAACGTGAATTTCAAGGGTGATTTCGTGTTTGTGACGAACAATTCGGCACCAGAGTGGGTCGTCGTCGGGGAATTCGAGGACGGTGGGCGGCGGA
TTACGTGGAGCAGCGTGAGGAATCCGGTGGTGGACGATTCCGTACGGGTTTCGAGCACGGTTGTGTACACGTGCGCCGACCTCGGTCTAGGGGATTTGCA
GCAGGCGACGGTGTCGGCGGGCTGGAGATTCTCGTTGAAAGACGGCGCGTAA
AA sequence
>Lus10029127 pacid=23151839 polypeptide=Lus10029127 locus=Lus10029127.g ID=Lus10029127.BGIv1.0 annot-version=v1.0
MYVAERSTGVGYGFQPDTAIWSGPYDVRPRGGVVCASALGMAGGRLILAGLISDQSDESQKVKGMKLWELDGETMQCGGEISELPAEYLKLLEVEFGSLS
SVNVNFKGDFVFVTNNSAPEWVVVGEFEDGGRRITWSSVRNPVVDDSVRVSSTVVYTCADLGLGDLQQATVSAGWRFSLKDGA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23390 Kelch repeat-containing F-box ... Lus10029127
[exp]
0 1
AT1G23390 Kelch repeat-containing F-box ... Lus10029128
[exp]
1.0 0.9631
AT4G28270 ATRMA2 RING membrane-anchor 2 (.1) Lus10031641
[exp]
1.4 0.9575
AT2G19570 DESZ, AT-CDA1, ... cytidine deaminase 1 (.1) Lus10007654
[exp]
4.9 0.8939
AT5G56980 unknown protein Lus10014282
[exp]
5.3 0.8689
AT3G27880 Protein of unknown function (D... Lus10032145
[exp]
5.5 0.8980
AT3G19450 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE... Lus10002812
[exp]
6.6 0.9019
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Lus10039404
[exp]
8.5 0.8818
AT3G48660 Protein of unknown function (D... Lus10015769
[exp]
9.6 0.8330
AT2G32510 MAPKKK17 mitogen-activated protein kina... Lus10035284
[exp]
9.8 0.8436
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Lus10013298
[exp]
9.8 0.8745

Lus10029127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.