Plant FIBer expression Database

Lus10029128 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23390 142 / 1e-40 Kelch repeat-containing F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013033
[exp]
282 / 3e-97 AT1G23390 226 / 1e-72 Kelch repeat-containing F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G042900
[exp]
157 / 2e-46 AT1G23390 248 / 2e-78 Kelch repeat-containing F-box family protein (.1)
PFAM info
Representative CDS sequence
>Lus10029128 pacid=23151786 polypeptide=Lus10029128 locus=Lus10029128.g ID=Lus10029128.BGIv1.0 annot-version=v1.0
ATGGCGACTCAGGATCATAACTCATCTCCGGCGGCGGACGAGGAAGCTCCGATTTACGGCGACATCCTGAACTCGATCCTAACCCACGTCCCATTAATCC
ACCTCTTACCGGCATCACAAGTCTCCCGCTCATGGAACGGCGCCGTTTCCACCTCCCTCCGCCGTTTGAACAAGCCCAAGCCCTGGCTGATCCTCCACAC
CCAGAACACCCGGTCCCCGTACCCGACAACCGCCCACGCATTCGACCCGCGGTCCTGGGTCTGGGTCGAGATCCACAAACCCGCTATTAATTACGTCTCT
GCCCTCCGCTCCGCTCACTCCTCCTTGCTCTACATGCTCTCCCCTGCCAAATTCTCCTTCTCCTTCGACCCGCTCCACTGCACGTGGGACCACGTCGACG
CCCCGATCATGTGGCGGACGGACCCCATCGTCGGGAAGGTCGGGGAATTCGCAGAGAGTAGACAGTACAGCCGGGGGGACCTGGGGATTTCGAGGATGAG
CCCTTGGCTGTCGAGATGTACGACGTTGAAGCACGCGCTTGGCGCGCGTGCGAGTCCATGCCCGCGATTTTTAAGGACTCCGCTGCGTCCACGTGGCTGA
AA sequence
>Lus10029128 pacid=23151786 polypeptide=Lus10029128 locus=Lus10029128.g ID=Lus10029128.BGIv1.0 annot-version=v1.0
MATQDHNSSPAADEEAPIYGDILNSILTHVPLIHLLPASQVSRSWNGAVSTSLRRLNKPKPWLILHTQNTRSPYPTTAHAFDPRSWVWVEIHKPAINYVS
ALRSAHSSLLYMLSPAKFSFSFDPLHCTWDHVDAPIMWRTDPIVGKVGEFAESRQYSRGDLGISRMSPWLSRCTTLKHALGARASPCPRFLRTPLRPRG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23390 Kelch repeat-containing F-box ... Lus10029128
[exp]
0 1
AT1G23390 Kelch repeat-containing F-box ... Lus10029127
[exp]
1.0 0.9631
AT4G28270 ATRMA2 RING membrane-anchor 2 (.1) Lus10031641
[exp]
2.4 0.9265
AT3G19450 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE... Lus10002812
[exp]
4.6 0.9127
AT5G65660 hydroxyproline-rich glycoprote... Lus10042927
[exp]
4.8 0.8718
AT1G51680 AT4CL1, 4CL.1, ... ARABIDOPSIS THALIANA 4-COUMARA... Lus10026143
[exp]
7.2 0.9243
AT1G52330 Late embryogenesis abundant (L... Lus10037534
[exp]
7.3 0.8951
AT1G52760 LysoPL2 lysophospholipase 2 (.1) Lus10025754
[exp]
10.1 0.9255
AT2G22680 WAVH1 WAV3 homolog 1, Zinc finger (C... Lus10003485
[exp]
11.3 0.8066
AT5G02090 unknown protein Lus10024357
[exp]
13.2 0.8705
AT3G27880 Protein of unknown function (D... Lus10032145
[exp]
13.9 0.8856

Lus10029128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.