Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60810 627 / 0 ACLA-2 ATP-citrate lyase A-2 (.1) AT1G10670 626 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4) AT1G09430 602 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013032 [exp] 728 / 0 AT1G60810 766 / 0.0 ATP-citrate lyase A-2 (.1) Lus10030897 [exp] 688 / 0 AT1G60810 761 / 0.0 ATP-citrate lyase A-2 (.1) Lus10030592 [exp] 629 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188900 [exp] 662 / 0 AT1G60810 725 / 0.0 ATP-citrate lyase A-2 (.1) Potri.010G042700 [exp] 631 / 0 AT1G10670 716 / 0.0 ATP-citrate lyase A-1 (.1.2.3.4) Potri.005G004900 [exp] 617 / 0 AT1G09430 795 / 0.0 ATP-citrate lyase A-3 (.1) Potri.013G004400 [exp] 614 / 0 AT1G09430 790 / 0.0 ATP-citrate lyase A-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF08442 [flax] [poplar] ATP-grasp_2 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10029129 pacid=23151682 polypeptide=Lus10029129 locus=Lus10029129.g ID=Lus10029129.BGIv1.0 annot-version=v1.0 ATGGCGCGCAAGAAGATCAGAGAGTACGACTCCAAGAGACTCCTCAAGGAGCATTTCAAAAGACTCTCCGGCTCCGATCTGCCCATCAAATCCGCCCAAG TTAAGGAATCGACTGATGTGATGGAGCTAGCGGAGAAGGAGGAGCCATGGCTGATGTCAGGGAAGCTGGTGGTGAAACCGGACATGTTGTTCGGCAAACG TGGCAAGAGTGGGTTGGTGGCTTTGAATCTGGATCTGGCCCAAGTTGCTTCCTTTGTGAAAGATAGGCTTGGGAAAGAAGTTGAGATGGGTGGATGCAAA GGACCTATAACTACTTTCATTGTCGAGCCGTTCATTCCTCACGATCAGGAGTTTTACCTCAACATTGTCTCCGAGAGGCTTGGATGCACTGTTTGCTTCT CTGAATGTGGTGGGATTGACATTGAAGAGAATTGGGATAAGGTTAAGACTATCTTTGTCCCAACTGGGGAGTCCTGGACTTCAGAGATCTGTGCTCCTCT TATTGCTACATTGCCTTTGGAGATTCGAGGCGAGATCGACCGGTTTATTTCAGTGGTGTATGCTCTATTCCAAGATCTTGACTTTACTTTCCTTGAGATG AATCCTTTCACTCTGGTGGATGGAAAGCCTTATCCTTTGGATATGAGGGGAGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTTAGATACCC TTACATTTCCTTTTGCTTTTTGTGTTGGAGATCTTGGCTATGCTTCAGAGCTTGGAAACTACGCGGAGTACAGCGGAGCTCCTAACGAAGACGAAGTTCT TCAGTATGCCAGAATTGTGATTGATTGTGCAACGTCTAATCCTGATGGCCGGAAGAGAGCCCTTGTAGTTGGAGGAGGGATTGCAAACTTCACCGATGTT GCTGCCACGTTCAATGGCATAATCCGAGCTATGAAGGAGAAGGAATCCAAGCTGAAAGCTGCAAGGATGCACATATATGTAAGAAGAGGAGGACCAAACT ACCAGAAGGGACTTACTAGGATGAGGGCACTCGGGGAAGAAATCGGCATCCCCATTGAGGTTTACGGGCCAGAAGCAACCATGACCGGAATCTGCAAGCA GGCTATTGAGTGCATATCTGTTGCTGCATAA
AA sequence Show only first row Show all	>Lus10029129 pacid=23151682 polypeptide=Lus10029129 locus=Lus10029129.g ID=Lus10029129.BGIv1.0 annot-version=v1.0 MARKKIREYDSKRLLKEHFKRLSGSDLPIKSAQVKESTDVMELAEKEEPWLMSGKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKDRLGKEVEMGGCK GPITTFIVEPFIPHDQEFYLNIVSERLGCTVCFSECGGIDIEENWDKVKTIFVPTGESWTSEICAPLIATLPLEIRGEIDRFISVVYALFQDLDFTFLEM NPFTLVDGKPYPLDMRGELDDTAAFKNFKKLDTLTFPFAFCVGDLGYASELGNYAEYSGAPNEDEVLQYARIVIDCATSNPDGRKRALVVGGGIANFTDV AATFNGIIRAMKEKESKLKAARMHIYVRRGGPNYQKGLTRMRALGEEIGIPIEVYGPEATMTGICKQAIECISVAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10029129 [exp]	0	1
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	1.4	0.9445
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	2.0	0.9335
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	6.0	0.9317
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	7.1	0.9001
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	11.7	0.9147
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	15.6	0.9319
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	20.2	0.9314
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	21.8	0.9313
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	23.7	0.9268
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	24.8	0.9311

Compare expression of checked genes

Lus10029129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.