Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05670 343 / 1e-119 signal recognition particle binding (.1.2) AT2G18770 328 / 1e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17060 43 / 7e-05 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 43 / 7e-05 ATARFB1C ADP-ribosylation factor B1C (.1) AT5G14670 42 / 0.0002 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 42 / 0.0002 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G23490 42 / 0.0002 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 42 / 0.0002 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 42 / 0.0002 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G24765 40 / 0.0006 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013031 [exp] 513 / 0 AT5G05670 357 / 2e-125 signal recognition particle binding (.1.2) Lus10030896 [exp] 472 / 4e-170 AT5G05670 350 / 1e-122 signal recognition particle binding (.1.2) Lus10030593 [exp] 465 / 3e-166 AT5G05670 352 / 7e-122 signal recognition particle binding (.1.2) Lus10013024 [exp] 264 / 4e-87 AT2G18770 223 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009571 [exp] 45 / 1e-05 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 42 / 0.0001 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10031436 [exp] 42 / 0.0002 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 42 / 0.0002 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 42 / 0.0002 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020900 [exp] 379 / 8e-134 AT5G05670 388 / 6e-138 signal recognition particle binding (.1.2) Potri.009G001600 [exp] 216 / 8e-71 AT5G05670 206 / 2e-67 signal recognition particle binding (.1.2) Potri.019G052200 [exp] 45 / 2e-05 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Potri.013G088800 [exp] 44 / 3e-05 AT5G17060 370 / 9e-133 ADP-ribosylation factor B1B (.1) Potri.005G142100 [exp] 43 / 6e-05 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 43 / 9e-05 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 43 / 9e-05 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 42 / 0.0002 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 42 / 0.0002 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 42 / 0.0002 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF09439 [flax] [poplar] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Lus10029130 pacid=23151730 polypeptide=Lus10029130 locus=Lus10029130.g ID=Lus10029130.BGIv1.0 annot-version=v1.0 ATGGAAGGGATCGAGCAGTGGAAGAAAGAGGCGGAGCAATGGGCTCAGCAAGGGATCGAGTACGTACGTCAGGTGCCGGAAGTTCAGCGAGCGATTGAAT ACGCCAGTCAGGTGCCGGCAATTCAACAAGGGATCGAATACGCAAGTCAGATACCTCCTGTTCAGCTCTACTCGGCTGCTGCTGTGGTGCTCTTCACTTC TCTTTTGTTCATACTAGTTCGTTTGTTCAAGCGCCCGAAATCTAATACGATTGTTTTGTCCGGACTCAGTGGTAGTGGGAAAACCATCCTTTTCTATCAG CTTCGAGATGGCTCGTCACACCTGGGTAGTGTCACCTCAATGGAACCAAACGAGGGTACTTTCATACTCCATTCTGAAGCTGGCAAGGGGCACAAAGTGA AGCCTGTCCACCTCGTTGATGTTCCTGGGCATGCTCGCCTTCGACCAAAGCTAGACGAGTTCCTACCTGAAGCAGCTGGCATTGTCTTCGTTGTTGATGC GCTAGAGTTCTTACCTAACCTCCGTGGAGTTTCAGAGTATCTGTATGATATTCTCACTAAAGCTAGTGTGGTAAAGAAGAAGGTCCCTGTCTTGATTTGC TGCAACAAGACCGAGAAGGTTACTGCACATACCAAAGATTTCATCTGTAAACAGCTGGAAAAAGAGATCGACAAGCTGCGAGCGTCGAGAAGCGCTGTTT CGGACGCTGATGTGGCAAACGACCACACACTCGGTACACCAGGGAAAGCTTTCTCATTCTCCCAGTGCACTAACAAAGTCTCCATTGGCGAAGCTTCCGG CTTGACTGGTAAGACAACTGACGTAGAACAGTTCATCAGGGAACATGTAAAGCCTTAG
AA sequence Show only first row Show all	>Lus10029130 pacid=23151730 polypeptide=Lus10029130 locus=Lus10029130.g ID=Lus10029130.BGIv1.0 annot-version=v1.0 MEGIEQWKKEAEQWAQQGIEYVRQVPEVQRAIEYASQVPAIQQGIEYASQIPPVQLYSAAAVVLFTSLLFILVRLFKRPKSNTIVLSGLSGSGKTILFYQ LRDGSSHLGSVTSMEPNEGTFILHSEAGKGHKVKPVHLVDVPGHARLRPKLDEFLPEAAGIVFVVDALEFLPNLRGVSEYLYDILTKASVVKKKVPVLIC CNKTEKVTAHTKDFICKQLEKEIDKLRASRSAVSDADVANDHTLGTPGKAFSFSQCTNKVSIGEASGLTGKTTDVEQFIREHVKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	2.6	0.9246
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	4.7	0.8747
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	4.9	0.8802
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	5.9	0.8798
AT2G15730			P-loop containing nucleoside t...		Lus10027910 [exp]	6.3	0.8555
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	8.5	0.8892
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	9.2	0.8886
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	9.4	0.8536
AT3G57630			exostosin family protein (.1.2...		Lus10042357 [exp]	9.7	0.8343
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	10.8	0.8598

Compare expression of checked genes

Lus10029130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.