Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25390 473 / 6e-160 Protein kinase superfamily protein (.1) AT1G18390 473 / 3e-159 Protein kinase superfamily protein (.1.2) AT5G38210 431 / 1e-142 Protein kinase family protein (.1) AT1G66880 436 / 3e-138 Protein kinase superfamily protein (.1) AT2G23450 285 / 2e-86 Protein kinase superfamily protein (.1.2) AT5G66790 254 / 7e-76 Protein kinase superfamily protein (.1) AT1G69910 251 / 2e-74 Protein kinase superfamily protein (.1) AT5G02070 239 / 7e-70 Protein kinase family protein (.1) AT1G69730 241 / 2e-69 Wall-associated kinase family protein (.1) AT3G53840 236 / 9e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016737 [exp] 476 / 3e-160 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 465 / 9e-156 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 362 / 2e-114 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 341 / 1e-111 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 280 / 3e-84 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 270 / 2e-80 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 264 / 6e-79 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 257 / 9e-77 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10014387 [exp] 245 / 2e-72 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045101 [exp] 565 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G044750 [exp] 513 / 8e-175 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 496 / 2e-168 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 497 / 2e-167 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 472 / 4e-159 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.017G118100 [exp] 450 / 1e-149 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 445 / 3e-148 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 442 / 6e-147 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 440 / 9e-147 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.017G118250 [exp] 435 / 2e-144 AT5G38210 542 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029132 pacid=23151849 polypeptide=Lus10029132 locus=Lus10029132.g ID=Lus10029132.BGIv1.0 annot-version=v1.0 ATGGACATCACAACTTTCTGCGTTCTTCTCCTCCTCGCAACGACGTCGTTTGCATCTCAGAAATCTTCTTCGTCACAGTGCAAACCCAAGAACTGCCCGA AGGGTCCTGAAATAACCTGCCCCTTTTGGCTATCTCACCAGCCCAACGACGGCGACGACGAACAACAGGGTCTCCTCTGTGGCCCGCCGGACTTCCAAAT CGCTTGCAACTCCGATGGATTCCCAGTTCTTGCCAACCAACACGATTATATCATCAGAGACTTCTTCCCCGACAATTACTCTATAGTCCTTTCATTTGCT TCTTCGTCGATGTCTTCCTGCTCAACTCCTCTCCGTAGCCTCACCCTCGATCCACCCTTCATACTCGCATCTAATGTCCGTACTCTCTACTTCTTCTACA ATTGCAGCAGAGTTCCGCCGGAGGGGAGTAAAGTTTACCCCTTGATTGATAATTGTTCCACCGACGATTCCAATCGTTATTCTTTCGTCGTCTCTGGAAA TGGCTTATCACTCCCTGAAGAGGTCGCTTCTTGCAAGCGTGTTGTTGAATCTCCAGTTTCTGATTATGATTACGGCGGTGATGGGTTTGATTTTGTCAAG ATTTTGAAGACGGGTTTCGTGTTGAATTGGACTGCTCCAAATTGCAGCGATTGCTCAGCCAGTGGCGGCTGCTGTGCCTTTGAAAATCGTCGATCTCTTT CCTTTTCGCCTCAGAGTTCTCAGCCCACTTCCTCTCCTCAAGGTGTTGGAGCTTCAGTTGGAAGTGTCTTGCTAATGCTCATCCTCTTCGTCATATATCT TCGATGTAAACGAAAGCCATATGATCATCCGCCTTCATCCTCTTTGTTATCTACAAGTAGACTACTGTCCGATCTTTCGTCCAAAGTCCAGGTCTTTTCC TATGCTGAACTTGAAGAGGCCACCAACAATTTCGGTTCAGATAATGAGCTTGCTGATGGAGGATTTGGCACTGTTTATTATGGTAAACTCAAGGACGGCC GCGAGGTTGCAGTCAAACGCCTATACGAAACCAATTACAAGAGGGTTGAACAGTTCATGAACGAGATCGACATTCCTACACGCTTGCGCCATCGAAATCT GGTCACATTGTACGGATGCACATCTCACCGTAGCCGTGAGCTCTTACTAGTCTACGAGTATATCCCCAACGGCACGGTGGCTGATCATCTCCACGGCGAA AGGACCAAAAAGCCTGGATCCCTCCCGTGGTCCGTCCGAATGAACATTGCTGTCGAAACCGCAAGCGCGCTTTCCTACCTCCACGCCTCTGAGATCATTC ACCGTGATGTCAAAACCACCAACATCCTCCTCGACGAGAATTTCGTGGTGAAAGTTGCGGATTTCGGACTCTCGCGCCTGTTTCCGAACGATGTCTCCCA TGTTTCGACGGCTCCCCAGGGGACTCCCGGTTATGTCGATCCAGAGTATCATCAGTGCTACCAGCTGACTAGTCGAAGCGATGTGTTCAGCTTCGGGGTG GTTCTCGTCGAGCTCATATCGTCGATGCCTGCTGTGGATATCACTAGGCACCGGCACGAGATCAACTTGTCGAACATGGCGATCAACAAGATCCAAGGCG ATGCCTTGCACGAACTCGTCGACCACAGTTTGGGGTTTGACTCGGATGAATCGATCGGGAAAATGATGACTGCGGTCGCTGAGCTGGCGTTCCAGTGTCT GCAGAGTGATAAGGACCTGAGGCCGTCGATGGAACAAGTGTTGCAGAATCTGCAGGACATTCAAAGACTGGGGGGGAATAATGATCCGAAAGAAAAGGGA ATCAAGATGATGCAGGATGTTCGATCTGATGATGCTGTGTTGTTGACTAGTGTTGACCAGCGACCAATCTCTCCAGATTCTGTCACTCTGAAATGGCAAA GCATTACTTCCACACCTAACACCAGTTCTTGA
AA sequence Show only first row Show all	>Lus10029132 pacid=23151849 polypeptide=Lus10029132 locus=Lus10029132.g ID=Lus10029132.BGIv1.0 annot-version=v1.0 MDITTFCVLLLLATTSFASQKSSSSQCKPKNCPKGPEITCPFWLSHQPNDGDDEQQGLLCGPPDFQIACNSDGFPVLANQHDYIIRDFFPDNYSIVLSFA SSSMSSCSTPLRSLTLDPPFILASNVRTLYFFYNCSRVPPEGSKVYPLIDNCSTDDSNRYSFVVSGNGLSLPEEVASCKRVVESPVSDYDYGGDGFDFVK ILKTGFVLNWTAPNCSDCSASGGCCAFENRRSLSFSPQSSQPTSSPQGVGASVGSVLLMLILFVIYLRCKRKPYDHPPSSSLLSTSRLLSDLSSKVQVFS YAELEEATNNFGSDNELADGGFGTVYYGKLKDGREVAVKRLYETNYKRVEQFMNEIDIPTRLRHRNLVTLYGCTSHRSRELLLVYEYIPNGTVADHLHGE RTKKPGSLPWSVRMNIAVETASALSYLHASEIIHRDVKTTNILLDENFVVKVADFGLSRLFPNDVSHVSTAPQGTPGYVDPEYHQCYQLTSRSDVFSFGV VLVELISSMPAVDITRHRHEINLSNMAINKIQGDALHELVDHSLGFDSDESIGKMMTAVAELAFQCLQSDKDLRPSMEQVLQNLQDIQRLGGNNDPKEKG IKMMQDVRSDDAVLLTSVDQRPISPDSVTLKWQSITSTPNTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	1.0	0.9113
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	2.4	0.9059
AT4G12070			unknown protein		Lus10031257 [exp]	2.4	0.9079
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	3.5	0.9015
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	4.5	0.8676
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	5.1	0.8624
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	6.2	0.8686
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	9.8	0.8417
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018795 [exp]	11.3	0.8589
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	12.4	0.8447

Compare expression of checked genes

Lus10029132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.