Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10660 338 / 7e-115 unknown protein AT5G62960 324 / 6e-109 unknown protein AT3G27770 250 / 1e-80 unknown protein AT2G47115 188 / 1e-56 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013029 [exp] 383 / 5e-127 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10030895 [exp] 287 / 2e-95 AT1G70505 256 / 6e-84 unknown protein Lus10030594 [exp] 287 / 3e-95 AT1G70505 261 / 6e-86 unknown protein Lus10027692 [exp] 284 / 8e-94 AT5G62960 355 / 2e-122 unknown protein Lus10042109 [exp] 283 / 5e-93 AT5G62960 397 / 1e-138 unknown protein Lus10032130 [exp] 267 / 8e-87 AT5G62960 303 / 2e-101 unknown protein Lus10014556 [exp] 265 / 1e-85 AT5G62960 305 / 3e-102 unknown protein Lus10038056 [exp] 236 / 5e-75 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 226 / 5e-71 AT1G10660 246 / 3e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042600 [exp] 409 / 2e-142 AT1G10660 372 / 1e-129 unknown protein Potri.012G082400 [exp] 323 / 8e-109 AT5G62960 387 / 1e-134 unknown protein Potri.015G078200 [exp] 321 / 8e-108 AT5G62960 382 / 8e-133 unknown protein Potri.001G347400 [exp] 283 / 3e-93 AT3G27770 314 / 9e-107 unknown protein Potri.014G115200 [exp] 239 / 7e-76 AT2G47115 340 / 4e-117 unknown protein Potri.002G190200 [exp] 230 / 1e-72 AT2G47115 344 / 1e-118 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029133 pacid=23151804 polypeptide=Lus10029133 locus=Lus10029133.g ID=Lus10029133.BGIv1.0 annot-version=v1.0 ATGGCTGCCGATACAACTGAGCCGAGCTACTGGCTAAACTGGAGATTCGCCGTATGTGCAGTTTTTTTAGCTTCCGCCATTGGTATATCTGCTGTTCTGA TATGGAAGTATGAAGGGTCCAAGGAATCTGAGTCAGATTCCACCAGAAGAGGAAGAAGGACAGTCAAAGATGCAACCTTGTATGAAGATGAAGCTTGGAA AACATGTCTGAAGACTATCCATCCTGGTTTTCTGCTAGCTTTTCGGATAATAGCTTTCGCTGTTCTCTTCGGTTTGATAACTACCAATGCTGTTAGGGAT GGAGGCGACATCTTCATCTTCTATACCCAGTGGACATTCTCTTTGGTGACAGTCTACTTCGGGCTTGGATCAGCAATGTCCATGTATGGATGTTGCAAAC AGTGCAGTAGAGCTGACGAGGAAGCTGGAGATTCGTCGAACCACTCAAAAGGCTCATCTGCGCTCCATGAACCTCGCTCCGTGCAAATGCCAGCTGGAAA TGCATGGAGCTATATCTTTCAAATCACCTTTCAGACTTGTGCAGGTGCTGTAGTTCTCACTGATTCTGTGTTCTGGTTCGTCTTGTATCCGTTTCTCATG CCGGATAATTTCAAGCTCGACATCATCAATATATGCATGCATTCAATCAACGCAGTTTTCCTCCTTGGTGACACCATGTTGAATGGGATGCGGTTCCCTA TGTTTCGGATCGCGTACTTCTTGCTGTGGACGAGTGTCTTCGTGGTTTGCCAGTGGATTATCCATGCCTTTGTTTCAATGTGGTGGCCATATCCATTTCT CGACTTGTCATCCAATCGCGCTCCCTTATGGTACCTCGGAGTTGGGCTGGTTCATGTCCCTTGTTTCGGGATATTTGCTCTGATAGTCAAGCTGAAATAC TTCTTGCTGACAAGATCATTTCCTGATTCATGCCATGTCTCCAGAACTTCAAACAGATGGAATATAAGCTATAATTCGGTTGAACTAAAGGTTTCAGATA CCACGAGTCACCTGTCCGAAACAGCCTTATATCAAAACAAAATGGACCTTCTGATTCTACTCATTATATACGAACTTGTGAACACAAAGCACACCTACAG ACGTATGTTGGCCTGTCAAGTACGAGCATTGCAGAAACCATCAAGCTCAAAAACAAGACAACAATGGTTGAATCAGACCTGCCTGGGCGTGCTGTTGCAA GCGAAATAA
AA sequence Show only first row Show all	>Lus10029133 pacid=23151804 polypeptide=Lus10029133 locus=Lus10029133.g ID=Lus10029133.BGIv1.0 annot-version=v1.0 MAADTTEPSYWLNWRFAVCAVFLASAIGISAVLIWKYEGSKESESDSTRRGRRTVKDATLYEDEAWKTCLKTIHPGFLLAFRIIAFAVLFGLITTNAVRD GGDIFIFYTQWTFSLVTVYFGLGSAMSMYGCCKQCSRADEEAGDSSNHSKGSSALHEPRSVQMPAGNAWSYIFQITFQTCAGAVVLTDSVFWFVLYPFLM PDNFKLDIINICMHSINAVFLLGDTMLNGMRFPMFRIAYFLLWTSVFVVCQWIIHAFVSMWWPYPFLDLSSNRAPLWYLGVGLVHVPCFGIFALIVKLKY FLLTRSFPDSCHVSRTSNRWNISYNSVELKVSDTTSHLSETALYQNKMDLLILLIIYELVNTKHTYRRMLACQVRALQKPSSSKTRQQWLNQTCLGVLLQ AK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10660			unknown protein		Lus10029133 [exp]	0	1
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	2.4	0.9032
AT3G57220			Glycosyl transferase family 4 ...		Lus10016077 [exp]	3.0	0.8904
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	3.2	0.9090
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	5.4	0.9119
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	7.9	0.8760
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10029347 [exp]	10.2	0.8717
AT3G60810			unknown protein		Lus10030273 [exp]	10.4	0.8924
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	10.5	0.8629
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008740 [exp]	12.0	0.8669
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10026801 [exp]	13.9	0.8352

Compare expression of checked genes

Lus10029133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.