Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23400 615 / 0 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT2G20020 403 / 5e-133 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 265 / 5e-83 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 241 / 8e-75 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 52 / 1e-06 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G29750 50 / 5e-06 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 45 / 0.0001 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013029 [exp] 773 / 0 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 391 / 5e-129 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 385 / 6e-127 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 367 / 1e-119 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 267 / 5e-84 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 236 / 4e-72 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 222 / 5e-67 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10019623 [exp] 189 / 4e-56 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 193 / 8e-56 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042500 [exp] 636 / 0 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G163100 [exp] 401 / 6e-132 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 275 / 6e-87 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 246 / 1e-76 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 60 / 4e-09 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 55 / 1e-07 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 50 / 4e-06 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10029134 pacid=23151720 polypeptide=Lus10029134 locus=Lus10029134.g ID=Lus10029134.BGIv1.0 annot-version=v1.0 ATGGCGATCATGGCGTCTCTTCAACCAAACTTGTTTTCTTCCCTTCCCTCAAAGCCACCATCAAACGACTCAAATTCTTCCTCCTTTTCTCCACCTCCAC CGCCGATTCCCATCCCGAAATATCCACCGCCGCGCGCGAAATCCAAACCCCCACCTCCAAACCCAACCAACCCAGCTCTCAAAATGACCCACCGGCGAAC CAAGTACTACAAGCCGGTAAAAGACGGCGTCATCAACACGGACGGGGACCGTTCCGTCTTAATCGGAGAGAACGGCGTTTCCTATCTCCTCCCGGACGCG CCGTTCGAGTTCCAATTCAGCTACTCGGAGACTCCGAGCGTCAAGCCTTTGGCGATTCGCGAGCCGGCGTTCCTGCCTTTTGCTCCTCCGACGATGAATC GTCCATGGACCGGGAAAGCGCCGCTTAAGCCCAAGAAGAAGAAAATCCCTCTCTTCGATTCGTTCAATCCGCCGCCGCCGGAGAAGAAGGGAGTCAAGTT CGTCGAGATGCCCGGACCGTACAAGCTTGGGAAGTACCCTGAGGAATCGATGACAAGGGAGCAGATTTTAGGGGAGCCTTTGACTAGACACGAGATCAGA TTGCTTGTCAAGCCGATGCTTTCTGATAATCGTCAGGTTAATTTAGGGAGGGATGGATTGACTCATAACATGTTGGAATTGGTTCATTCTCATTGGAAGA GGAGGAGAGTTTGTAAAGTTAAGTGTAAAGGAGTTCCCACTGTGGATATGAAGAATGTGTGCCGCCGTTTGGAGGAGAAGACTGGAGGTAAGATCATTCA TCGAGTGGGTGGAGTTGTATATCTATTCCGGGGCCGAAACTACAACTATCGAACTCGTCCGCAGTATCCAGTCATGCTGTGGAAGCCGGCTGCTCCGGTT TATCCAAAGCTGATCCAGGAAGCGCCTGAAGGGTTGACAAAAGATGAAGCGGACGAGTTTCGGCGCAAGGGGAAAAAACTGTTGCCCATACGTAAATTAT CGAAGAACGGCGTGTACATAAACTTGGTGAGAGATGTCAGGACGGGTTTCGATGTTAGTCCTTTGGTGAAGATCGATTGCACAGGGATGCATGCAACTGA TTACAAGAAGTTGGGTGCTAAGCTTAAGGAGTTGGTTCCGTGTGTGCTATTATCATTCGATGACGAACAGATTCTGATGTGGAGAGGGCGTGACTGGAAG CCAAGATATCCCGATCTTGCTTCAGTTCCAATTCCTTCTCATTCCGCCATTGACATTCCTGGCAAGTCCGAGGATGATCGAAGCGATTCAGATGTTGGAA CTGTGAGATCAAGCCCTAAAATGATGTCCCTGTGGAACCGAGCGCTCGAATCAAGCAAGGCCATTATCCTGGAGAAGTTTGATCAGTTAAGCCCAGATGG CCTCCTGTCTAAAGTCGAAGACTTTGAGACCGTCTCACAAGTTGCGGAACATTCCTACCCTGCTGTAGTATTAGCCAGCGAAGATGCTTCTCTCGATGAA AATTCTAACAAAGACGGAACATACGATCATGAACTCGAACAACAAGACGATGCCTACGAGGACAACTCCGATGATGATGATTCTGATTCTGATTTGTTCA AACAAGTCGATCCAATCGTTCCTCTCGGATCATTGCCCATGGACAAGATAGCTAATAGGCTAATAGAAAGATAG
AA sequence Show only first row Show all	>Lus10029134 pacid=23151720 polypeptide=Lus10029134 locus=Lus10029134.g ID=Lus10029134.BGIv1.0 annot-version=v1.0 MAIMASLQPNLFSSLPSKPPSNDSNSSSFSPPPPPIPIPKYPPPRAKSKPPPPNPTNPALKMTHRRTKYYKPVKDGVINTDGDRSVLIGENGVSYLLPDA PFEFQFSYSETPSVKPLAIREPAFLPFAPPTMNRPWTGKAPLKPKKKKIPLFDSFNPPPPEKKGVKFVEMPGPYKLGKYPEESMTREQILGEPLTRHEIR LLVKPMLSDNRQVNLGRDGLTHNMLELVHSHWKRRRVCKVKCKGVPTVDMKNVCRRLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPV YPKLIQEAPEGLTKDEADEFRRKGKKLLPIRKLSKNGVYINLVRDVRTGFDVSPLVKIDCTGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGRDWK PRYPDLASVPIPSHSAIDIPGKSEDDRSDSDVGTVRSSPKMMSLWNRALESSKAIILEKFDQLSPDGLLSKVEDFETVSQVAEHSYPAVVLASEDASLDE NSNKDGTYDHELEQQDDAYEDNSDDDDSDSDLFKQVDPIVPLGSLPMDKIANRLIER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029134 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	2.6	0.9287
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	5.7	0.9055
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	6.9	0.9030
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	11.1	0.9064
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10022290 [exp]	12.7	0.8825
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10036477 [exp]	13.0	0.8651
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10015847 [exp]	14.4	0.8603
AT1G36320			unknown protein		Lus10033109 [exp]	14.9	0.8527
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	16.0	0.8887
AT1G53800			unknown protein		Lus10003930 [exp]	20.4	0.8661

Compare expression of checked genes

Lus10029134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.