Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10650 314 / 5e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G60610 283 / 6e-95 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G45976 129 / 3e-35 SBP1 S-ribonuclease binding protein 1 (.1) AT1G32740 107 / 5e-27 SBP (S-ribonuclease binding protein) family protein (.1) AT4G17680 104 / 1e-26 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 102 / 3e-25 SBP (S-ribonuclease binding protein) family protein (.1) AT3G12920 102 / 7e-25 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT5G45100 95 / 1e-22 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G79110 92 / 6e-21 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT4G19700 90 / 1e-20 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013027 [exp] 569 / 0 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 458 / 7e-164 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 458 / 7e-164 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 325 / 3e-112 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 138 / 2e-38 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10018294 [exp] 104 / 1e-25 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 100 / 6e-24 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10031202 [exp] 99 / 1e-23 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10040613 [exp] 97 / 7e-23 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042200 [exp] 421 / 3e-149 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 234 / 8e-76 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 134 / 6e-37 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 132 / 5e-36 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.003G085800 [exp] 121 / 5e-32 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.001G148600 [exp] 121 / 7e-32 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.015G118000 [exp] 105 / 3e-26 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G119200 [exp] 104 / 1e-25 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.011G142700 [exp] 100 / 5e-24 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.001G439600 [exp] 99 / 1e-23 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029136 pacid=23151705 polypeptide=Lus10029136 locus=Lus10029136.g ID=Lus10029136.BGIv1.0 annot-version=v1.0 ATGCTGGGAGGCAACAGCGGCAATCCCCTACTTCCAGTTTTTATCGATGACAACCGCCTTCCTTATCAGAACCACGCTTCAAATCAGCTCCAGTTATTCG GCAACTTGCCGGCTGGTTGTAATGTCGATGCTGTTAACTACTTCGGAAGCGAACACATCTCCCCTATGGTTCAGACCAATAAGCGAAGCAGGGAAGCCGA CGATTTCGGTAGACAACAACAAAAGCTCCAGATTTCGTTGAACTATAACCTATGCCGAGACGAAGTTGACCGTTCAGCAAGTATTCCGGCAAACCCTAAT GCCGTGTCGACTGGATTACGACTCTCGTACGATGATGAGGAGGGTAAGTCGTCTTTTCCATCCGCAAGTGGAAGCATGACAGCAATACCTTCGATGATCT TGATGAAGCAGAGACACGCTGCTTCGTTTCTTGCTGCTATCGAGAAGGGAGTCGCGAAGAAGATCCGTGAGAAAGACATCGAGATAGAAAACATGAATCG TCGGAACAAGGAATTGATCGACCGGATAAAGCAAGTAGCAACAGAAGCACAGAACTGGCACTACAGAGCCAAGTACAACGAATCTGTCGTAAATGTCCTG AAAGCCAACCTCCAGCAGGCCATCTCGCAAGGAGCCGAACAAGTGAAAGAAGGGTTCGGAGACAGCGAGTTCGACGATGCTGCCTCTTGTGGGCCATCTT CAAAGTCGAAACCTCTCTCGCGAAATCACCACTGCAGGGCGTGCAAAGCGAGGGAGGTATCGGTGTTGTTGATGCCGTGTAGGCATCTTTGTTTGTGTAT AGACTGCGATATGTTTGTCAATGTTTGCCCTGTATGCCAGTTGATCAAAACCACCAGCATCCAAGTATACTTGTCCTGA
AA sequence Show only first row Show all	>Lus10029136 pacid=23151705 polypeptide=Lus10029136 locus=Lus10029136.g ID=Lus10029136.BGIv1.0 annot-version=v1.0 MLGGNSGNPLLPVFIDDNRLPYQNHASNQLQLFGNLPAGCNVDAVNYFGSEHISPMVQTNKRSREADDFGRQQQKLQISLNYNLCRDEVDRSASIPANPN AVSTGLRLSYDDEEGKSSFPSASGSMTAIPSMILMKQRHAASFLAAIEKGVAKKIREKDIEIENMNRRNKELIDRIKQVATEAQNWHYRAKYNESVVNVL KANLQQAISQGAEQVKEGFGDSEFDDAASCGPSSKSKPLSRNHHCRACKAREVSVLLMPCRHLCLCIDCDMFVNVCPVCQLIKTTSIQVYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	2.8	0.9429
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	3.3	0.9496
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	3.9	0.9374
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	4.4	0.9176
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	4.5	0.9313
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	4.9	0.9359
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	6.0	0.9415
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	7.1	0.9424
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	7.4	0.9302
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	10.2	0.9346

Compare expression of checked genes

Lus10029136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.