Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23440 298 / 2e-103 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) AT1G56700 270 / 1e-92 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013026 [exp] 410 / 1e-147 AT1G23440 309 / 6e-108 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10001521 [exp] 251 / 8e-84 AT1G56700 312 / 2e-107 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Lus10031438 [exp] 171 / 2e-50 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005800 [exp] 273 / 8e-94 AT1G56700 335 / 5e-118 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Potri.013G005100 [exp] 271 / 1e-92 AT1G56700 344 / 1e-121 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0379 [flax] [poplar] PgaPase PF01470 [flax] [poplar] Peptidase_C15 Pyroglutamyl peptidase
Representative CDS sequence Show only first row Show all	>Lus10029137 pacid=23151724 polypeptide=Lus10029137 locus=Lus10029137.g ID=Lus10029137.BGIv1.0 annot-version=v1.0 ATGGGATCAGAAGCACCAAAGTCTGTAGTCGTCCACGTAACCGGATTCAAGAAATTCCAAGGTGTGACCCAGAATCCTACCGAGACTATAGTGAACAGGC TCAAGGATTACGTCGCTAAGCGAGGATTGCCTGCTGGCGTTACGGTAGGCAGTTGCACTGTCCTCGAAACGGCTGGAGATGGAGCTCTTACGATGCTCTA CAACACTCTCGAATCAAACACCACCGCCACAACGAATGCAGAGAAGAACGAGCAAGTTGTCTGGCTTCACTTGGGGGTGAACAGCGGGGCAGTGAAGTTC GCCATTGAACGATGTGCAGTAAATGAAGCCACTTTTCGATGCCCCGATGAAATGGGATGGCAACCTCAGAACCATCCTATAATCTCGGAAGATGGAGAAA TCACTTGTCTAAGACAGACGTGGTGCCCGGTCGATGGAATCTTCATATACTTGAGGAAGAAAGGCTTCGATGCTACAATATCAGACGATGCTGGACGCTA TGTCTGCAACTATGTATACTATCATTCCCTCAAGTTCGCCCAGCAGAAGGGCCAGAAGTCTCTATTCGTTCATGTCCCACTCTTCTCGAGAATCGACGAG GAGACCCAGATGGAGTTTGTGGCGACTGTTGTAGAAGCTATAGGATCAACCTGTTGA
AA sequence Show only first row Show all	>Lus10029137 pacid=23151724 polypeptide=Lus10029137 locus=Lus10029137.g ID=Lus10029137.BGIv1.0 annot-version=v1.0 MGSEAPKSVVVHVTGFKKFQGVTQNPTETIVNRLKDYVAKRGLPAGVTVGSCTVLETAGDGALTMLYNTLESNTTATTNAEKNEQVVWLHLGVNSGAVKF AIERCAVNEATFRCPDEMGWQPQNHPIISEDGEITCLRQTWCPVDGIFIYLRKKGFDATISDDAGRYVCNYVYYHSLKFAQQKGQKSLFVHVPLFSRIDE ETQMEFVATVVEAIGSTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	0	1
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	1.4	0.9626
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	2.4	0.9456
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	3.2	0.9539
AT4G07390			Mannose-P-dolichol utilization...		Lus10017025 [exp]	5.0	0.9179
AT5G37480			unknown protein		Lus10001333 [exp]	6.2	0.9132
AT1G50740			Transmembrane proteins 14C (.1...		Lus10008541 [exp]	6.7	0.9322
AT5G37480			unknown protein		Lus10013637 [exp]	6.9	0.9247
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	8.7	0.9217
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	8.7	0.9426
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	9.9	0.9355

Compare expression of checked genes

Lus10029137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.