Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23450 685 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 300 / 2e-90 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G25970 284 / 5e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 272 / 1e-80 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 269 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G61170 270 / 7e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 271 / 9e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 267 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32430 265 / 3e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47840 262 / 1e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022890 [exp] 313 / 5e-96 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024199 [exp] 315 / 3e-95 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 307 / 1e-93 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 292 / 5e-88 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 291 / 1e-87 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017032 [exp] 285 / 1e-85 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021355 [exp] 282 / 1e-84 AT4G32430 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 280 / 4e-82 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022469 [exp] 272 / 2e-81 AT3G50420 720 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212000 [exp] 751 / 0 AT1G23450 743 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 306 / 3e-93 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G131800 [exp] 288 / 4e-88 AT3G50420 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 281 / 2e-82 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G146800 [exp] 275 / 2e-82 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 276 / 4e-82 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 277 / 5e-82 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 276 / 6e-82 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 277 / 1e-81 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 273 / 1e-81 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029138 pacid=23151833 polypeptide=Lus10029138 locus=Lus10029138.g ID=Lus10029138.BGIv1.0 annot-version=v1.0 ATGCGAGGCGGAAAGTCGCTGTCTTTTGTTCGCACCGTAACAACCTGGTTAGGAGGGACCAAGAATCTGCCAGCTAAGTTGCAGTTGGAATCCTACTGTG AACCTTACGCTCACGAGGTTGTGTATTCCCACAACAGGAAGATAGACGACTATATAAAATCCGGGCAGTTCAAACTTGCCCAACAGGTGTTCGATGAAAT GCGCGCGAGAGACGTTGTCTCGTACAATTTGCTGATTTCAGGGCATCGCAAGTATGGAGTTCTGCAACATGCTCTGTGGCTCTATCATGAGATGGTTTCA CACGGCATCAGAGAGAGTGAATCGACGGTTTGTTCTGTGCTGAGCATCTGTAGTGAGGTTGGAAGGTTGAGAGATGGAATTCAAGTTCATTGTAGGGTGG TTAAGCTTGGATTTGGCTGTAATTTGTTTGTTGGGAGTTCACTTGTTGGTCTTTACATGGATCTGGGACTTGAGGACTTAGGTTTAGGATTGTTTTATGA ATTGTCTGAGAGGAATTTAGCTACTTGGAATCTGGTTTTACGTCGGTTTTCTGAATTGGCTAGAGCTGATGAGTTGTTAGGACTGTATGATGCGATGAGA TTGGAAGGAGTAGAGGGAAATGGGGTTACTTTCAGCTATTTGATCCATGGATGTTGTAATGAAAGGTTTGGAATTGCAGGGAAGAAGCTCCATTCTCATG TGATTAAGGTTGGTTGGGAAGCTTCAAATGTTTTCATTGCAAACGGTTTGGTGGATTTCTACTCTGCTTGTGGAATACTGTCTGATGCAAAGAAATCTTT CGAAGGTATTGAATTCGAAGACGTTCTGTCATGGAATTCGATGGTAGCAGCATATGTAAATAACGGATTTGTAACTGAAGCAGTGGAATTGTTTAACGCG ATGCAATTTTTCAGGAAGAGGCCGTCCATTCGTTCGTTCGTAGGGTTCTTGAATTTCGCCAGCGCAGCTGGTGAAATTCTGCTCGGAAAGCAAATTCATT CCTGGGTTTTGAAGGCCGGGTTTGCAGTGGGAAGTGTCCATGTCCAGTCAGCATTGATTGATATGTATGGGAAATGCAGGGATATCGAGAGCTCAGTGTC CTTTTACCAATGTGTTCCTGAGAGAAGTTTGGAATGCTGCAACTCATTAATGACATCTTTGCTTCGTTGCGGTGTTATCGAGGATGTTATCGAACTGTTC AGTTTGATGGTTGATGAAGGAACTGGTCTCGACGAGGTTTCGTTATCCTCTGTGTTGAAAGCATTATCAGAACCTGGTTTTTCAAGTTTGGCCAGCTGTA GCATGGTGCATTCGTGTGTTACAAAGCTAGGTTTCCAAACTGATGCAGCAGTTTCGTCTTCCTTGATTGATGCATATTCGAATTCCGGTAGCGTTCAGCT TTCTAGGAAGGTTTTCAAGCAGCTTGTGTCACCCAATGTCATCTGCTACACAGCGATGATGGGAGGATATGCTCATAATGGAATGGGGAGGGAAGGGCTG GAGATGCTTAAAGAAATGATGTTGAAAGGTCTAAAACCGGACGAAGTGACTTTCTTGTGTGTTTTGAATGGCTGCAGCCACTCCGGATTGGTTGAAGAAG GAAAGATGGTTTTCGATGTGATGAAACTTATGTATGGGATTTCCCCTAACAGAAGGCACTTCTCGTGTATGGTGGATCTCTTGGGGCGTTCGGGTATGTT GAACGAAGCGGAGGAATTGCTGCTGCAGTCTGCTGGGAAGAGTGATTGGGTTATGTGGAGTTCATTGCTGCAAGGTTGCAGGAACCATAAGAACGAGACG GTGGGGAGAAGGGCAGCGAAAGTCTTGTTGAATGTTGATCCGGGGGATTTCGCTGTCTATTTGCAGGTATCGAACTACTATGCTGAAATTGGGGAATATG ATTTATCAATGCAGGTAAGAGAAACCGGCATTCGAAGGACGATTTCTAGGGGGTTTGGTCGGAGTTTCGTTCAGGTCAATGGTGGCCATCAATGTTGA
AA sequence Show only first row Show all	>Lus10029138 pacid=23151833 polypeptide=Lus10029138 locus=Lus10029138.g ID=Lus10029138.BGIv1.0 annot-version=v1.0 MRGGKSLSFVRTVTTWLGGTKNLPAKLQLESYCEPYAHEVVYSHNRKIDDYIKSGQFKLAQQVFDEMRARDVVSYNLLISGHRKYGVLQHALWLYHEMVS HGIRESESTVCSVLSICSEVGRLRDGIQVHCRVVKLGFGCNLFVGSSLVGLYMDLGLEDLGLGLFYELSERNLATWNLVLRRFSELARADELLGLYDAMR LEGVEGNGVTFSYLIHGCCNERFGIAGKKLHSHVIKVGWEASNVFIANGLVDFYSACGILSDAKKSFEGIEFEDVLSWNSMVAAYVNNGFVTEAVELFNA MQFFRKRPSIRSFVGFLNFASAAGEILLGKQIHSWVLKAGFAVGSVHVQSALIDMYGKCRDIESSVSFYQCVPERSLECCNSLMTSLLRCGVIEDVIELF SLMVDEGTGLDEVSLSSVLKALSEPGFSSLASCSMVHSCVTKLGFQTDAAVSSSLIDAYSNSGSVQLSRKVFKQLVSPNVICYTAMMGGYAHNGMGREGL EMLKEMMLKGLKPDEVTFLCVLNGCSHSGLVEEGKMVFDVMKLMYGISPNRRHFSCMVDLLGRSGMLNEAEELLLQSAGKSDWVMWSSLLQGCRNHKNET VGRRAAKVLLNVDPGDFAVYLQVSNYYAEIGEYDLSMQVRETGIRRTISRGFGRSFVQVNGGHQC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23450			Tetratricopeptide repeat (TPR)...		Lus10029138 [exp]	0	1
AT1G65090			unknown protein		Lus10009554 [exp]	4.0	0.7419
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	10.1	0.7635
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	15.7	0.7016
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10004114 [exp]	18.3	0.7115
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10029998 [exp]	22.0	0.7126
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	23.6	0.7300
AT1G18210			Calcium-binding EF-hand family...		Lus10027081 [exp]	25.2	0.7205
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	30.7	0.6806
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	35.9	0.6514
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	38.0	0.7040

Compare expression of checked genes

Lus10029138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.