Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23460 574 / 0 Pectin lyase-like superfamily protein (.1) AT1G70500 547 / 0 Pectin lyase-like superfamily protein (.1) AT1G80170 316 / 3e-104 Pectin lyase-like superfamily protein (.1) AT3G57510 294 / 8e-96 ADPG1 Pectin lyase-like superfamily protein (.1) AT3G07970 292 / 4e-95 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT2G41850 288 / 1e-93 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT5G14650 288 / 1e-93 Pectin lyase-like superfamily protein (.1) AT1G48100 284 / 2e-91 Pectin lyase-like superfamily protein (.1) AT1G02460 282 / 2e-90 Pectin lyase-like superfamily protein (.1) AT1G56710 279 / 5e-90 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030888 [exp] 521 / 0 AT1G70500 461 / 3e-161 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 432 / 8e-149 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 316 / 4e-104 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 296 / 2e-96 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 292 / 1e-94 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 281 / 3e-90 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 281 / 3e-90 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 276 / 7e-90 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 277 / 8e-89 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211900 [exp] 650 / 0 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 625 / 0 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 610 / 0 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 321 / 2e-106 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.011G159801 [exp] 300 / 2e-101 AT1G23460 290 / 2e-97 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 297 / 3e-97 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 296 / 4e-96 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 293 / 4e-94 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 291 / 6e-94 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 289 / 9e-94 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10029139 pacid=23151752 polypeptide=Lus10029139 locus=Lus10029139.g ID=Lus10029139.BGIv1.0 annot-version=v1.0 ATGGACCGGATATTGTTCATTTCTTTTCTTGGCTTCCTGTTAGTGGGCCATGGAGTTGCAGGAAACATGGTATATGATACACTCGGAATGGTTGAGGAGC TTGAGACCTTTGACATAGAAGAACAAGAAGAGCTGGGAGTATTAGATGTACCGGCATGGGAAGGTGAACGCGGTACCAAGGTTCTTGTGAATGTTGATAG CTTTGGTGCAGTTGGAGATGGCGTTGTTGATGACACTCAGGCCTTTGTAAATGCTTGGAAGACTGCCTGTAATACAACAAAATCGGTCTTCTTGGTTCCT CCAGGGGGTCGCTATTTAGTGAACGCAACGAAGTTTAAAGGGCCCTGTGCGGATAAGCTCATCATTCAGATTGATGGAACAATAGTAGCACCCGATGAAC CTGCAAACTGGGATCCGAGTTCTCCAAGAACATGGCTTGATTTCAGTAAGCTGAATGGTGTCATCTTTCAAGGACATGGAGTCATCGACGGCTCCGGAAG TAAATGGTGGGCTGCTTCCTGCAAAAAGAACAAGACCAATTGCAACTCAGTCCGAATTTCCAATGTGCTAGTCTCTTGTCCAGGAGATAGCCCCAACACG GATGGGATCCACATTACTGCGTCGACTAATGTTGTTCTGCAAGATAGCAAAATTGGAACAGGGGATGATTGTGTCTCAATTGTAAGTGGTAGCTCAAATA TCAAAATGAAGAGGCTGTATTGTGGACCAGGCCATGGTATCAGCATTGGGAGCCTTGGAAAGGACAACTCCACCGACTTTGTCTGGAAAGTGGTCCTCGA CACGGCACTGCTCCGGGAGACCACGAATGGCCTGAGGATCAAGACTTGGCAGGGTGGCCATGGGTATGTCCGTGGGATACGTTACGAAAACGTGCAAATG GAGAATGTTGCCAACCCTATCATTATTGACCAATTCTACTGCGATTCGCCGAAATCCTGCCAGAACCAGTCAGCAGCCGTGGAAATCAGCCAGATCATGT ACCGGAACATTAGCGGGACATCCAAGAGTGCCAAAGCCATGAAGTTTGCTTGCAGCGACACGGTTCCTTGCAGTAACATTGTCCTGACCAACGTCAACTT AGAGGGCAAAGATGGCACGGTGGAGACTTTCTGCAACTCGGCCCAAGGCTTTGGATATGGCGTCATTCATCCTTCAATTGACTGCCTAACCGCCAAAGAC AAAGAACAGCAAATTCTCGAAGTTTCAGAAACTGTTCACACAGAGCTCTGA
AA sequence Show only first row Show all	>Lus10029139 pacid=23151752 polypeptide=Lus10029139 locus=Lus10029139.g ID=Lus10029139.BGIv1.0 annot-version=v1.0 MDRILFISFLGFLLVGHGVAGNMVYDTLGMVEELETFDIEEQEELGVLDVPAWEGERGTKVLVNVDSFGAVGDGVVDDTQAFVNAWKTACNTTKSVFLVP PGGRYLVNATKFKGPCADKLIIQIDGTIVAPDEPANWDPSSPRTWLDFSKLNGVIFQGHGVIDGSGSKWWAASCKKNKTNCNSVRISNVLVSCPGDSPNT DGIHITASTNVVLQDSKIGTGDDCVSIVSGSSNIKMKRLYCGPGHGISIGSLGKDNSTDFVWKVVLDTALLRETTNGLRIKTWQGGHGYVRGIRYENVQM ENVANPIIIDQFYCDSPKSCQNQSAAVEISQIMYRNISGTSKSAKAMKFACSDTVPCSNIVLTNVNLEGKDGTVETFCNSAQGFGYGVIHPSIDCLTAKD KEQQILEVSETVHTEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	2.0	0.9846
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	2.4	0.9824
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	5.5	0.9628
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	6.5	0.9600
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	7.3	0.9436
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	7.9	0.9676
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	7.9	0.9592
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	8.0	0.9464
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	8.0	0.9651
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	8.1	0.9632

Compare expression of checked genes

Lus10029139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.