Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10640 640 / 0 Pectin lyase-like superfamily protein (.1) AT1G60590 639 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 504 / 1e-176 Pectin lyase-like superfamily protein (.1) AT3G26610 388 / 2e-130 Pectin lyase-like superfamily protein (.1) AT1G48100 362 / 3e-120 Pectin lyase-like superfamily protein (.1) AT1G02460 335 / 2e-109 Pectin lyase-like superfamily protein (.1) AT4G01890 326 / 3e-106 Pectin lyase-like superfamily protein (.1) AT1G56710 320 / 3e-104 Pectin lyase-like superfamily protein (.1) AT1G23460 300 / 4e-96 Pectin lyase-like superfamily protein (.1) AT1G70500 291 / 9e-93 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013025 [exp] 803 / 0 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 760 / 0 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 749 / 0 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 410 / 8e-139 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 337 / 3e-110 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 332 / 2e-108 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 332 / 2e-108 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 332 / 3e-108 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 290 / 6e-92 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042100 [exp] 691 / 0 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 663 / 0 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 520 / 0 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.008G188300 [exp] 397 / 7e-134 AT3G26610 545 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 391 / 1e-131 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 366 / 5e-122 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 364 / 8e-121 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 363 / 9e-121 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 362 / 2e-119 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 355 / 1e-117 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10029140 pacid=23151787 polypeptide=Lus10029140 locus=Lus10029140.g ID=Lus10029140.BGIv1.0 annot-version=v1.0 ATGAGAGGGCTGAGTTTCAGAAGCTTCACATTCATGGTGTTGATTGCATTTCTAGTTTGGAGCTTAAGTATTGATACTTGCATTGCTAGAAGCAGCAGGC ATTGGAGGCATCACAGGGGGTCTGCAGCTTCTTTCATGAAGAAGAAAGGCAAGAGTCATGGAAGCAGCAACCACCACAACAATAATCACAATGGCGGAGG ATCGTTGAAACCACCGAAGAAAGCTCCAAATCCACCTCTTCCAACTCCTCCTGCTCCAATTCAACCACCTAAGCAGGTTCCTGCTGCATCACCACCTCCT CCTAGTTCTACGGGACCTCAGAAAGATTCTCTCACCTTCAATGTGCTCGATTTTGGCGCAAAGGGAGATGGCAAGTGTGACGACACAAAGGCATTCCAGG CTACATGGGCAGCTGCTTGTAAAGTTGAGAAATCAGTGATGTTTGTTCCAGAGGGATATCAATTCCTAGTAGGACCAATTTCTTTCGCCGGCCCATACTG CCAGAAAAGCATCACCTTCCAGGTGAGCAAATTGCTTTTAGCACAAGCGAACTCCTACGTTTGGGGCAAAGGATTGCTGCAGTGGCTGGAATTCAGCAAG CTAGCACAGATCACAATCCAAGGGAAAGGTACCATTGATGGGAGTGGTTCAGTGTGGTGGCAAGACAGCCCTCTTAGTGAACCTGAAGATAACTTATCAC ACCAGATAATCCTGTTGAATAATAACACATTGGAGAAACATCCACCGATGCCGGTAAGAAGTGAACTCAGCAGCAAAATGCCAAGCCAGAAGCCAACGGC ACTGAGGTTTTATGGAAGTCTGAATGTTACGGTCACAGGCATAACAATTCAGAATAGTCCTCAATGCCACCTCAAGTTTGACAACTGCATTGGAGTCATG GTGCATCACATAAGTGTTTCATCTCCTGGAGATAGTCCTAATACAGATGGAGTCCACTTGCAGAATTCCAGAGACGTGCTAATACACAGCAGCAGCCTTG CTTGCGGAGATGATTGCATTTCCATACAGACAGGATGTACAAATGTATACATACATGATGTCAACTGTGGTCCAGGACATGGTATTAGCATTGGAAGTTT GGGAAAGGACAATACACGAGCCTGTGTCTCTAATGTTACTGTGAAGAATGTCAATATGCACAACACAATGACTGGTGTCAGGATCAAGACATGGCAGGGA GGATCAGGCTCTGTGTATGGGATTATGTTCTCAAACATTCAAGTTTCCGAAGTCCAGTTCCCAATTGTGATTGACCAATTCTACTGTGACAAGTCCACAT GCAAAAACCAATCATCAGCAGTAGGGGTATCAGGGATCAACTACGAAAGAATCAAAGGAACGTACACGGTGAAACCTGTGCATTTCGCCTGCAGTGACAG CCAGCCATGTGCAGACATAAGTTTAGCAAACATCGAGTTAAAACCGATACAAGAGAAGTACCGCATGTACGATCCTTACTGCTGGGAGACATTCGGAGAG TTGAATACTCCCACCGTCCCTCCGATTGGATGTCTCCAAATTGGTAAGCCATCAAGCAACCATCCCCACCAAACCGATCATGATACCTGTTGA
AA sequence Show only first row Show all	>Lus10029140 pacid=23151787 polypeptide=Lus10029140 locus=Lus10029140.g ID=Lus10029140.BGIv1.0 annot-version=v1.0 MRGLSFRSFTFMVLIAFLVWSLSIDTCIARSSRHWRHHRGSAASFMKKKGKSHGSSNHHNNNHNGGGSLKPPKKAPNPPLPTPPAPIQPPKQVPAASPPP PSSTGPQKDSLTFNVLDFGAKGDGKCDDTKAFQATWAAACKVEKSVMFVPEGYQFLVGPISFAGPYCQKSITFQVSKLLLAQANSYVWGKGLLQWLEFSK LAQITIQGKGTIDGSGSVWWQDSPLSEPEDNLSHQIILLNNNTLEKHPPMPVRSELSSKMPSQKPTALRFYGSLNVTVTGITIQNSPQCHLKFDNCIGVM VHHISVSSPGDSPNTDGVHLQNSRDVLIHSSSLACGDDCISIQTGCTNVYIHDVNCGPGHGISIGSLGKDNTRACVSNVTVKNVNMHNTMTGVRIKTWQG GSGSVYGIMFSNIQVSEVQFPIVIDQFYCDKSTCKNQSSAVGVSGINYERIKGTYTVKPVHFACSDSQPCADISLANIELKPIQEKYRMYDPYCWETFGE LNTPTVPPIGCLQIGKPSSNHPHQTDHDTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60590			Pectin lyase-like superfamily ...		Lus10029140 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	11.9	0.7793
AT3G19200			unknown protein		Lus10014046 [exp]	15.7	0.7880
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	23.2	0.6975
AT4G38380			MATE efflux family protein (.1...		Lus10023943 [exp]	39.9	0.7561
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	43.8	0.7479
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	48.4	0.7209
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	49.3	0.6741
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	57.6	0.6939
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10000664 [exp]	71.1	0.6965
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	72.6	0.6894

Compare expression of checked genes

Lus10029140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.