Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24560 527 / 4e-180 unknown protein AT3G49055 61 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013022 [exp] 1059 / 0 AT1G24560 624 / 0.0 unknown protein Lus10025844 [exp] 590 / 0 AT1G24560 750 / 0.0 unknown protein Lus10038257 [exp] 583 / 0 AT1G24560 736 / 0.0 unknown protein Lus10007123 [exp] 97 / 2e-24 AT1G24560 52 / 9e-10 unknown protein Lus10027489 [exp] 87 / 1e-17 AT3G49055 244 / 3e-75 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183800 [exp] 604 / 0 AT1G24560 691 / 0.0 unknown protein Potri.010G049400 [exp] 591 / 0 AT1G24560 642 / 0.0 unknown protein Potri.008G184600 [exp] 291 / 4e-93 AT1G24560 302 / 2e-97 unknown protein Potri.015G146100 [exp] 81 / 8e-16 AT3G49055 191 / 1e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029143 pacid=23151810 polypeptide=Lus10029143 locus=Lus10029143.g ID=Lus10029143.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCGGGAGGCGAAGAGCTTGACTCGGTGTTGAGTGACGTGGAGGAGGAGGAGGATCAGCCGGCGCCGATCGTGATTTTCAAGAACCAGAAGC AACCTGAGCATGTTTCCGTCGATAGATACACGGAGCTCCTGGATACATACGCGGAGCTCCTGGGGGAGCGCGACCGCGGGCGGGAGGCTCGGCGAGCGGC GGAGGATTCGAAGGCCGAGCTGCTGGAGAAGTTCGATCGAGTTAGGAGAGTTGCTCAGGAGGCAATCCAGAAGCGGGATGAGGCTGTGAGGGAGAGGGAG AAGGGTGCAGTTGAAGTCAGCGAGGTTGCTGATCAGCGGGATGAGATTGCGAGGCAGCTGGACGGAGCGATTAAAACGAGGGATTCGATGCGGCTGGAGA TGGAGAACTCGAGGCATTTGCTGGTGAGCGGGATTGAGAAGATATCTGGGAAATTGAGGGACTACAGGAACTTCACCGCCGGTGGATTGCCGCAGTCGCC GAAGTACAGCGGACTTCCGGCGGTTGCGTACGGAGTTCTGAAGAGGACGATTGAGATAGTTGAGGAGCTGGTGCAGCAGATTCATGCAGCGAATCAGTCG AGGAACGATGCTAAGGATCAGATGGAGCAGAGGAATTTCGAGATTGCGATTGAGGTTTCTGAGCTCGAGGCGACAATCGGCGGTCTGAGACTGGAATTGG AAGGGAAGACGGCGGTGATCGGGAAGTTGGAGAAAACAGCAGCGGAGAAGGAAAGTATGGCTTCTGAGATTGAGAGAGGGATGTGGGAGAAGGCGGAGTT GGAAGACAGATTGAGAAGTTTGGAGACGAAGATGGAATGTTTAAAGCCTTTACTAGTCGATCAATTCACTCTAACCTGGAAAATTCATGACCAGCTTTTT GATGCCATGAAGATCGTTGATAAGAACTATCAACACAGTGAAATCCCACAGTCCTTATTCTTCCAAGAAGAGAAAGACATTGGCGAAAACCTGAGAGGTT CCTTATCCGGAATGGAATCGATTCGTGAGTTGACTAGAATCTTAGGTGAAAAGATGAAGGATGTGATGCAGGTGAAGAATCATGAACTGAAGCGTTCTGA TGAAACAGTAGGTCAGCTGATTAAGGAGAAGGAGTATATTAGTTATCTACTAAGGAGTGCTTTGTCAATGAGACCCACTTGGGATCCATCTTCCAAAGCG AAAGATTTGTTTCAAGCTGCAGAGAATGGTCTGAGAGATGCCGGCATTGATTTCAAGTTCAGCAAGGTTCTTGGTGATCATAAATTTCCAGACTCGGAGG AGGGCGAAATATACACTCTGGCGGGTGCTTTGGAGAAAGTTGTGAAGGCTTCTCAGCTTGAGATCATCGAGTTGCGGCATCGCGTAGAAGGACTCAGGAA TGAATCAATTTTGCTGAAGGAGAAGATAGAGATCCAAGCTAAGGAGCAACGTAGCAAGATGCACAGAATAGAGGAACTTGAAGATAAAGAAAGAGCAGCA AACGAGAATATTGAAGGGTTGATCATGGACATTACTGCAGCAGAGGAAGAGATTCTGAGATGGAAAGTAACAGCAGAACAGGAGGCTGATGCAGGTCATG CTGTCGAAAAAGACTTCATTGCTCAGGTATCGACGCTTAAAAATGAGCTTGAAGAGGCGAAGCAAGTGACATCCGAGTTAGAGAAGAAGCTAAAGTTCAA AGAAGAGACCGCAACTGCAGCGATGGCAGCACGAGAGGCTGCCGAGAAGTCGTTGAGATTGGCTGACGTGAGAGCCACCAGGCTGAGGGAGAGAATCGAG GAGCTCAGCAGTCGGCTCGAAGAGTTTGAAACGCGAGAAGACACCGGTGGTGGTCGAAGTAGACACAGATACATATGCTGGCCGTGGCAGTTTCTAGGGT TAGATATCGTTGGAACTCCAGTAGAAGCACCGGAACACATCTCCAACGAAATGGAGCTCTCTGAACCCCTGTTGTGA
AA sequence Show only first row Show all	>Lus10029143 pacid=23151810 polypeptide=Lus10029143 locus=Lus10029143.g ID=Lus10029143.BGIv1.0 annot-version=v1.0 MAGAGGEELDSVLSDVEEEEDQPAPIVIFKNQKQPEHVSVDRYTELLDTYAELLGERDRGREARRAAEDSKAELLEKFDRVRRVAQEAIQKRDEAVRERE KGAVEVSEVADQRDEIARQLDGAIKTRDSMRLEMENSRHLLVSGIEKISGKLRDYRNFTAGGLPQSPKYSGLPAVAYGVLKRTIEIVEELVQQIHAANQS RNDAKDQMEQRNFEIAIEVSELEATIGGLRLELEGKTAVIGKLEKTAAEKESMASEIERGMWEKAELEDRLRSLETKMECLKPLLVDQFTLTWKIHDQLF DAMKIVDKNYQHSEIPQSLFFQEEKDIGENLRGSLSGMESIRELTRILGEKMKDVMQVKNHELKRSDETVGQLIKEKEYISYLLRSALSMRPTWDPSSKA KDLFQAAENGLRDAGIDFKFSKVLGDHKFPDSEEGEIYTLAGALEKVVKASQLEIIELRHRVEGLRNESILLKEKIEIQAKEQRSKMHRIEELEDKERAA NENIEGLIMDITAAEEEILRWKVTAEQEADAGHAVEKDFIAQVSTLKNELEEAKQVTSELEKKLKFKEETATAAMAAREAAEKSLRLADVRATRLRERIE ELSSRLEEFETREDTGGGRSRHRYICWPWQFLGLDIVGTPVEAPEHISNEMELSEPLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24560			unknown protein		Lus10029143 [exp]	0	1
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	5.1	0.8389
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	7.2	0.8322
AT1G59600		ZCW7	ZCW7 (.1)		Lus10007745 [exp]	13.1	0.8006
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	13.5	0.8194
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	18.6	0.8207
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	24.0	0.7957
AT1G61670			Lung seven transmembrane recep...		Lus10025219 [exp]	25.2	0.8110
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	28.7	0.8206
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	38.8	0.7881
AT4G17020			transcription factor-related (...		Lus10002564 [exp]	40.5	0.7377

Compare expression of checked genes

Lus10029143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.