Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14670 371 / 7e-129 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G10630 369 / 2e-128 ATARFA1F ADP-ribosylation factor A1F (.1) AT3G62290 369 / 4e-128 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G70490 369 / 5e-128 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 369 / 5e-128 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 369 / 6e-128 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT2G15310 265 / 8e-87 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 247 / 3e-80 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 238 / 8e-77 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 238 / 2e-76 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013021 [exp] 400 / 6e-139 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 375 / 4e-130 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 374 / 2e-129 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 370 / 2e-128 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 377 / 4e-120 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10013020 [exp] 313 / 2e-103 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10002817 [exp] 266 / 1e-87 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10027870 [exp] 241 / 7e-78 AT1G10630 241 / 2e-82 ADP-ribosylation factor A1F (.1) Lus10009571 [exp] 238 / 1e-76 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007400 [exp] 373 / 1e-129 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 373 / 1e-129 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 373 / 1e-129 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 371 / 5e-129 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 371 / 5e-129 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 371 / 6e-129 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 363 / 8e-126 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 362 / 2e-125 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.005G142100 [exp] 335 / 8e-115 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.001G301200 [exp] 285 / 2e-95 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10029144 pacid=23151673 polypeptide=Lus10029144 locus=Lus10029144.g ID=Lus10029144.BGIv1.0 annot-version=v1.0 ATGGTTGCAGCAATCTGGATGAGTGATCTGATCTACATCGTTGCGGATCTAGATGATCTGTTGTATGGTTTGAGTTTTATTCAGGTGTTGCTATGTGTAG GGATCAACAGAAAGGAAGAGGAAATGGGGTTGACATTCACGAAACTGTTCAGCCGGCTGTTTGCCAAGAAGGAGATGAGAATTCTGATGGTTGGTCTCGA TGCGGCTGGTAAGACCACCATCTTGTACAAGCTCAAGCTTGGTGAGATCGTCACCACCATTCCTACTATTGGATTCAATGTTGAGACTGTTGAGTACAAG AACATCAGCTTCACAGTGTGGGATGTCGGGGGTCAAGACAAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTTATCTTCGTTGTCG ACAGTAATGACAGAGATCGCGTTGTTGAGGCCAGAGATGAGCTGCATAGGATGTTGAATGAGGATGAACTCCGCGATGCAGTGTTGCTTGTTTTCGCCAA CAAGCAGGATCTGCCGAATGCAATGAACGCTGCTGAGATCACTGACAAGCTTGGCCTCCACTCCCTCCGTCAGCGACACTGGTACATCCAGAGCACCTGT GCTACATCGGGCGAGGGGCTTTACGAAGGTCTGGATTGGCTCTCCAACAACATCGCTAACAAGGGATCAAACCAGCAAGGAAGAGAAAATGGGATTGACG TTCACGAAACTGTTCAGCAGGCTGTTTGCCAAGAAGTGTTCAGCCGGCTGTTTGCCAAGAAGGAGATGAGAATTCTGATGGTTGGTCTCGATGCGGCTGG TAAGACCACCATCTTGTACAAGCTGAAACTTGGTGAGATCGTCACCACCATTCCTACCATTGGATTCAATGTGGAGACTGTGGAATACAAGAACATCAGC TTCACAGTGTGGGATGTCGGGGGTCAAGACAAGATCCGACCATTGTGGAGGCACTATTTCCAAAACACTCAGGGTCTCATCTTTGTTGTGGACAGTAATG ACAGAGATCGTGTTGTTGAGGCCAGAGATGAATTGCATAGGATGTTGAACGAGGATGAACTCCGAGATGCAGTGTTGCTCGTTTTCGCTAACAAACAGGA TCTGCCAAATGCAATGAATGCCGCTGAGATCACTGACAAGCTCGGCCTCCACTCACTCCGCCAACGACACTGGTACATCCAGAGCACCTGTGCTACATCA GGTGAGGGTCTTTACGAAGGCCTGGATTGGCTCTCCAACAACATCGCCAACAAGGTACGAACGAACATTCTCGATTTAAAACATCAAAAATACATCATGC CGATACCCCGAGTTGCTGAATGCTTAATGGCGCGCATGCTGAATTTGTGCAGGCTTAAATGTTGGGAAGCAGCAAGACTTGAGGTTGGCAAAGTTCTGGA TGCAGGGGGGTGA
AA sequence Show only first row Show all	>Lus10029144 pacid=23151673 polypeptide=Lus10029144 locus=Lus10029144.g ID=Lus10029144.BGIv1.0 annot-version=v1.0 MVAAIWMSDLIYIVADLDDLLYGLSFIQVLLCVGINRKEEEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC ATSGEGLYEGLDWLSNNIANKGSNQQGRENGIDVHETVQQAVCQEVFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS GEGLYEGLDWLSNNIANKVRTNILDLKHQKYIMPIPRVAECLMARMLNLCRLKCWEAARLEVGKVLDAGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	0	1
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016486 [exp]	1.0	0.8660
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	3.5	0.8546
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	6.0	0.8518
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	6.3	0.8523
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	6.3	0.8538
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	7.7	0.8603
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	7.9	0.8048
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	9.6	0.8185
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	10.0	0.8132
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	13.5	0.8492

Compare expression of checked genes

Lus10029144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.