Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60470 489 / 8e-175 ATGOLS4 galactinol synthase 4 (.1) AT2G47180 486 / 2e-173 ATGOLS1 galactinol synthase 1 (.1) AT1G09350 476 / 1e-169 ATGOLS3 galactinol synthase 3 (.1) AT1G56600 473 / 3e-168 ATGOLS2 galactinol synthase 2 (.1) AT1G60450 427 / 1e-150 ATGOLS7 galactinol synthase 7 (.1) AT4G26250 424 / 6e-149 ATGOLS6 galactinol synthase 6 (.1) AT5G23790 419 / 2e-147 ATGOLS5 galactinol synthase 5 (.1) AT5G30500 399 / 2e-139 GolS10 galactinol synthase 10, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G18660 82 / 9e-17 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G54940 80 / 5e-16 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031434 [exp] 468 / 4e-166 AT2G47180 543 / 0.0 galactinol synthase 1 (.1) Lus10010897 [exp] 462 / 4e-164 AT2G47180 533 / 0.0 galactinol synthase 1 (.1) Lus10013020 [exp] 402 / 6e-140 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10018922 [exp] 88 / 1e-18 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 87 / 2e-18 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 85 / 1e-17 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10029932 [exp] 81 / 2e-16 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10033485 [exp] 79 / 7e-16 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10031507 [exp] 79 / 1e-15 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189400 [exp] 498 / 2e-178 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.014G116800 [exp] 498 / 2e-178 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.010G042000 [exp] 497 / 7e-178 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.002G191600 [exp] 485 / 4e-173 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.010G150400 [exp] 470 / 1e-167 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.005G006800 [exp] 463 / 1e-164 AT1G56600 539 / 0.0 galactinol synthase 2 (.1) Potri.013G005800 [exp] 463 / 1e-164 AT1G56600 543 / 0.0 galactinol synthase 2 (.1) Potri.008G101000 [exp] 459 / 4e-163 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.013G005900 [exp] 315 / 1e-107 AT1G56600 363 / 2e-127 galactinol synthase 2 (.1) Potri.007G107200 [exp] 84 / 2e-17 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10029145 pacid=23151710 polypeptide=Lus10029145 locus=Lus10029145.g ID=Lus10029145.BGIv1.0 annot-version=v1.0 ATGGCCCCGGAAGTGTTTTCCTCCGACAAAGCCGTAATCATGACCGCTGCCGGCGCTCGAGGGTACTCGCCGGCGGGGAGGGCATATGTGACATTTCTAG CGGGGAATGGGGATTACGTGAAAGGGGTGGTGGGGTTGGCTAAAGGGTTGAGGAAAGTGAGGAGTGCTTATCCTCTAGTGGTGGCTGTGCTGCCCGACGT GCCGGAAGAGCACCGCCGGCGACTGAAGGATCAAGGGTGTATGGTGAGTGAGATCGAGCCCATTTACCCGCCGGCGAATCAGACTCAGTTCGCCATGGCT TACTACGTCATCAACTACTCTAAGCTCCGCATTTGGAACTTTTCGGATTACAGCAAGATGATATACCTGGACGCTGACATCCAAGTCTACGACAACATAG ACCACATCTTCGACTCCCCCGACGGCTACTTCTACGCCGTCAAGGACTGCTTCTGCGAGCCAACTTGGAGCCACACCCCTCAATACGGCGTCGGATACTG CCAGCAGTGCCCCGACAAGGTGGCGTGGCCAGCTGACCACGAAATGGGCCCACCTCCTTCTCTATACTTCAACGCCGGCATGTTCGTTTTCGAGCCTAGC CAGTCCACGTACGATGCCTTGCTGGAGAGGCTCGCCGTCAGCCCAACGACGCCGTTTGCTGAGCAGGATTTCTTGAACGTGTTTTTCCGGGATAAGTACA AGCCTATTCCGCTAGTTTACAATTTGGTCCTTGCTATGCTGTGGCGCCACCCTGAGAATGTCGACGTGGACGAGGTCAAAGTCGTCCATTACTGTGCTGC TGGGTCGAAGCCATGGAGGTATACAGGAAAGGAGGCGAACATGGAAAGAGAAGACATCAAGATGTTCGTGGCGAGATGGTGGGAGATCTACAACGACAAG TCGTTGGACTTGAAGTCTACTCAGGTTCATCGACAATATGAAAACAACACACCAGTTGATATTGACAACTATAGTAATAATAGTTTATTAGCGATCGAAA TATCATCAAGGACATCATCGATCATCATGTCATCCATAACACCCGAGCCCACAATGTCATACGTCTCGGCTCCTTCTGCTGCATGA
AA sequence Show only first row Show all	>Lus10029145 pacid=23151710 polypeptide=Lus10029145 locus=Lus10029145.g ID=Lus10029145.BGIv1.0 annot-version=v1.0 MAPEVFSSDKAVIMTAAGARGYSPAGRAYVTFLAGNGDYVKGVVGLAKGLRKVRSAYPLVVAVLPDVPEEHRRRLKDQGCMVSEIEPIYPPANQTQFAMA YYVINYSKLRIWNFSDYSKMIYLDADIQVYDNIDHIFDSPDGYFYAVKDCFCEPTWSHTPQYGVGYCQQCPDKVAWPADHEMGPPPSLYFNAGMFVFEPS QSTYDALLERLAVSPTTPFAEQDFLNVFFRDKYKPIPLVYNLVLAMLWRHPENVDVDEVKVVHYCAAGSKPWRYTGKEANMEREDIKMFVARWWEIYNDK SLDLKSTQVHRQYENNTPVDIDNYSNNSLLAIEISSRTSSIIMSSITPEPTMSYVSAPSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	0	1
AT2G47010			unknown protein		Lus10007453 [exp]	1.0	0.9824
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	4.0	0.9675
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	4.2	0.9602
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031208 [exp]	4.6	0.9600
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	4.7	0.9760
AT1G58070			unknown protein		Lus10019953 [exp]	7.1	0.9689
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	7.7	0.9473
AT5G18460			Protein of Unknown Function (D...		Lus10003100 [exp]	10.9	0.9483
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	13.0	0.9635
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	13.8	0.9572

Compare expression of checked genes

Lus10029145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.