Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32180 454 / 3e-154 ATPANK2 pantothenate kinase 2 (.1.2.3) AT1G60440 427 / 7e-149 ATCOAA, ATPANK1 pantothenate kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013019 [exp] 721 / 0 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3) Lus10009520 [exp] 461 / 1e-154 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10020341 [exp] 457 / 6e-154 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041800 [exp] 523 / 0 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3) Potri.008G189500 [exp] 506 / 1e-179 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3) Potri.015G077300 [exp] 473 / 2e-159 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.012G081600 [exp] 468 / 7e-158 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03630 [flax] [poplar] Fumble Fumble
Representative CDS sequence Show only first row Show all	>Lus10029146 pacid=23151708 polypeptide=Lus10029146 locus=Lus10029146.g ID=Lus10029146.BGIv1.0 annot-version=v1.0 ATGGGAGAGAGTTGTTTAGAGATTGGTGGAGATCAAATTCAAACCATTGGTCAAATATCTCATTTGGCCTTGGATATTGGAGGAACGTTAATAAAGATGG TGTATTTCTGTAGAGATAGTAATGGTTGTAGTAGTGATGATGTTAAAGATCAAGTGTGTTCTTCAAATGGGAAGGAAGAGCATCCTGCTATTGAAGGAAG TCTTCATTTTGCCAAGCTGGAAACAACCAAGATAAACGATTGCTTAGAGTACATAAAGTCCAAGAAGCTTCAGTTTGATGGTTTTCTGCATCACGAGAAT ACCAGCAAGGATACAAATTTCATTAAGGCCACAGGTGGTGGAGCACATAAATTTTCGGATCTTTTCAACGAAAAGCTTAGCATTACTCTCGAAAAGGAGG ACGAAATGGACTGTCTTGTAGCCGGAGCCAACTTTTTGCTCAAGGCAGTCCGTCGCGAAGCATTCACATACATAGACGATGTGAAGGAGTTTGTGGAGAT TGATCAAAATGATTTGTATCCCTATCTACTGGTTAACATTGGATCTGGTGTTAGCATGATAAAGGTCGATGGAGATGGAAAATTCGAAAGAGTTAGCGGA ACAAGTGTTGGAGGGGGCACTTTTTGGGGCTTGGGAAGGTTACTGACCAAATGCAAGAGCTTTGATGAGTTGCTGGAGTTGAGTCATCGAGGAAATAACC GTGTGATCGACATGCTCGTTGGAGATATTTATGGCGGAATGGATTATTCCAAGGTCGGTCTTACATCTACAACTATTGCTTCCAGCTTTGGCAAGGCGAT TTCTGGCCATAAGGAGCTATTAGATTATGAACCGGAAGATATCGCACGATCACTTCTCAGAATGATCTCCAACAACATTGGACAGATTGCTTACTTGAAC GCACTCCGATTCGGCCTAAAGAGAATATTTTTCGGTGGATTTTTCATCCGGGGACAGTCATACACAATGGACACTATATCCGTCGCAGTTAATTTCTGGT CTAAAGGAGAAGCAAAAGCTATGTTCTTGCGGCATGAAGGATTTCTCGGAGCAATCGGCGCCTTTGTTAGCTACGACAAACAGCGTCTTGATGACTTATT GGCTCGAAACTCGTTGCAGCTACAAGTTGGGACATCGCATCCTGTTGATACAGATTCCGGTACCGTAACTGGAGAATTTATAGAGAATGAAACCATTAAT TGCACTATACTTAGATCTTAG
AA sequence Show only first row Show all	>Lus10029146 pacid=23151708 polypeptide=Lus10029146 locus=Lus10029146.g ID=Lus10029146.BGIv1.0 annot-version=v1.0 MGESCLEIGGDQIQTIGQISHLALDIGGTLIKMVYFCRDSNGCSSDDVKDQVCSSNGKEEHPAIEGSLHFAKLETTKINDCLEYIKSKKLQFDGFLHHEN TSKDTNFIKATGGGAHKFSDLFNEKLSITLEKEDEMDCLVAGANFLLKAVRREAFTYIDDVKEFVEIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERVSG TSVGGGTFWGLGRLLTKCKSFDELLELSHRGNNRVIDMLVGDIYGGMDYSKVGLTSTTIASSFGKAISGHKELLDYEPEDIARSLLRMISNNIGQIAYLN ALRFGLKRIFFGGFFIRGQSYTMDTISVAVNFWSKGEAKAMFLRHEGFLGAIGAFVSYDKQRLDDLLARNSLQLQVGTSHPVDTDSGTVTGEFIENETIN CTILRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	0	1
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	1.0	0.9550
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	2.0	0.9410
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	2.2	0.9404
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	3.0	0.9417
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	3.3	0.9301
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	4.0	0.9330
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	6.5	0.9282
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	7.5	0.9343
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	7.6	0.9197
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	8.2	0.9495

Compare expression of checked genes

Lus10029146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.