Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70480 363 / 4e-126 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2) AT1G23560 283 / 2e-94 Domain of unknown function (DUF220) (.1) AT1G23600 171 / 4e-51 Domain of unknown function DUF220 (.1.2) AT1G23520 169 / 1e-50 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2) AT1G23690 169 / 2e-50 Domain of unknown function DUF220 (.1.2.3) AT1G23640 167 / 2e-48 unknown protein AT1G23670 162 / 8e-48 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2) AT1G23660 160 / 2e-47 Domain of unknown function DUF220 (.1) AT1G23580 159 / 1e-46 Domain of unknown function DUF220 (.1) AT1G23590 138 / 3e-39 Domain of unknown function DUF220 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013018 [exp] 575 / 0 AT1G70480 372 / 2e-129 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041700 [exp] 436 / 2e-154 AT1G70480 385 / 5e-134 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02713 [flax] [poplar] DUF220 Domain of unknown function DUF220
Representative CDS sequence Show only first row Show all	>Lus10029147 pacid=23151743 polypeptide=Lus10029147 locus=Lus10029147.g ID=Lus10029147.BGIv1.0 annot-version=v1.0 ATGGGGGAGACAGAACTGGAGGAGAGAGCTCCTAGTGTGAACATTCCCAAGGGGAAGAGGAAAGGGTTTGATCCGTCGTTTCTAGTGCAGCTACCCAGCA AGCTTCAGAATTCCTTCAAGTCGCAGCTGAGGAAATTCAGCAGAGGTAACAAGGGAGGAATCTCTACTGGGTCATCTGATGTTGCCATTGGGATTGATTT GGAGAAGCAGTTGCAGGCTTGGAGAGGGAATCCTTCATGGGTTGATCAATCTCCAAAGATAGAGGTGAGTGTGCCAAAGGGGTCTCTTTGCAATCTCAGC GTGAAGGTGAATGTTGGTTTACCACCAGATGCTGTGTACAACATTGTAACTGACCCTAATAACAGGAGGGTTTTCAAGAACATCAAGGAAGTAATATCCA GGAAAGTTCTGTTTGATGATGGCCGGAGGCAACTGGTGGAAGTTGAACAAGCAGCTATATGGACATTCCTTTGGTGGTCAGGGACCATATCTGTTCATGT TTTGGTCGATCAAAACCGTGACAGTCTTTCCATGAACTTCAAGCAGTTGAAAACCGGGTTTATGGACAGGTTCGAAGGGTCCTGGAAAGTTGAGCCTCTA TTTGTCGACGAGCAGATCTGCCATCCGGTGAAGCCTAAAACATGGGGAGATTACGAGTCATGTACTGGAGGTCGAGGAAGGATAGGATCAGTAGTAAGCT TGGAACAGTTGATCCAGCCATCGATGGTTCCACCGCCACCGATTTCTTGGTACCTGAGAGGGATCACTTCCAGAACCACAGAAATGATTGTGAATGATCT CCTTGCTGAATCTGCCAGAATCAGAGAAGGGCTCAACGGGCCGAAGAAGCTGGAAGAAGAATCTGAATCTTCATCAGCAAGTGTGTTGGATCAGGAACGA GATTTGGAGTCGTCGAATATCAAAGAACGGTGGATCATGCACAGGAAGAACGTGAAAAATCAACGCAGAAGAGATTCAGGACGCTGA
AA sequence Show only first row Show all	>Lus10029147 pacid=23151743 polypeptide=Lus10029147 locus=Lus10029147.g ID=Lus10029147.BGIv1.0 annot-version=v1.0 MGETELEERAPSVNIPKGKRKGFDPSFLVQLPSKLQNSFKSQLRKFSRGNKGGISTGSSDVAIGIDLEKQLQAWRGNPSWVDQSPKIEVSVPKGSLCNLS VKVNVGLPPDAVYNIVTDPNNRRVFKNIKEVISRKVLFDDGRRQLVEVEQAAIWTFLWWSGTISVHVLVDQNRDSLSMNFKQLKTGFMDRFEGSWKVEPL FVDEQICHPVKPKTWGDYESCTGGRGRIGSVVSLEQLIQPSMVPPPPISWYLRGITSRTTEMIVNDLLAESARIREGLNGPKKLEEESESSSASVLDQER DLESSNIKERWIMHRKNVKNQRRRDSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	0	1
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	2.4	0.8601
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	3.7	0.8540
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	4.2	0.8441
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	7.3	0.8239
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	8.0	0.8346
					Lus10025227 [exp]	8.9	0.8216
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	9.4	0.8182
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	9.5	0.8329
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	10.1	0.8315
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	11.5	0.7437

Compare expression of checked genes

Lus10029147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.