Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 110 / 5e-29 DC1 domain-containing protein (.1) AT4G31240 61 / 1e-11 protein kinase C-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013017 [exp] 218 / 2e-69 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10017252 [exp] 62 / 7e-12 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 60 / 3e-11 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059401 [exp] 122 / 2e-33 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059800 [exp] 120 / 2e-33 AT1G60420 390 / 1e-132 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 122 / 3e-33 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 122 / 3e-33 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 119 / 3e-32 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 118 / 7e-32 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 117 / 1e-31 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 116 / 3e-31 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 113 / 5e-30 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1) Potri.002G017200 [exp] 62 / 3e-12 AT1G60420 303 / 3e-97 DC1 domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029148 pacid=23151847 polypeptide=Lus10029148 locus=Lus10029148.g ID=Lus10029148.BGIv1.0 annot-version=v1.0 ATGTTCAAAGCTGAGAGCATTCCTCATCTTGTGATTCTGGACGCGGAAGAAGGGAAAGTTTCTTGTCGCAGTGGAGTCAGAATCGTCAGGAAGTATGGCG CTGAAGGTTATCCCTTTACTGAGGAGAGGCTCCGGTTGTTGATGGAGGAAGAGGAGAACGCTAAGAGGAATCAGACTCTGAGGTCATTGCTAGCTTCACC GTCTCGAGATTACCTGATCTCTAACGACGGAACCAAGACTGATATACTTGAGCTGGAAGGGGAAATGGTTTGCTTGTACATTGCACTAGTTGCTAATGCG TCATGCGCCGAGTTCACATCTAAACTAGTGGATTTCTACAACGAAATCAAAGGAAATGGAGAGGGTTCTGAATTGCGGATTTTCACCTTATTAATTAAAT ACCCACTAGAATAG
AA sequence Show only first row Show all	>Lus10029148 pacid=23151847 polypeptide=Lus10029148 locus=Lus10029148.g ID=Lus10029148.BGIv1.0 annot-version=v1.0 MFKAESIPHLVILDAEEGKVSCRSGVRIVRKYGAEGYPFTEERLRLLMEEEENAKRNQTLRSLLASPSRDYLISNDGTKTDILELEGEMVCLYIALVANA SCAEFTSKLVDFYNEIKGNGEGSELRIFTLLIKYPLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	2.4	0.8773
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	2.6	0.8969
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	4.9	0.8158
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	6.2	0.8526
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	9.8	0.8243
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	10.4	0.8258
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	10.4	0.8325
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	13.6	0.7550
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	14.5	0.7868
					Lus10006216 [exp]	15.3	0.8207

Compare expression of checked genes

Lus10029148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.