Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 271 / 2e-87 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 266 / 1e-85 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 260 / 6e-83 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 257 / 2e-81 O-Glycosyl hydrolases family 17 protein (.1) AT3G57270 237 / 1e-75 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT4G29360 239 / 1e-74 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G26600 233 / 1e-73 Glycosyl hydrolase superfamily protein (.1.2) AT1G30080 233 / 2e-73 Glycosyl hydrolase superfamily protein (.1) AT4G18340 230 / 4e-72 Glycosyl hydrolase superfamily protein (.1) AT4G16260 224 / 1e-70 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013016 [exp] 684 / 0 AT5G55180 272 / 5e-88 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 256 / 1e-81 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 254 / 8e-81 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 253 / 2e-80 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 252 / 1e-79 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002807 [exp] 243 / 1e-77 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10011482 [exp] 240 / 1e-75 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 230 / 3e-72 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10004391 [exp] 232 / 4e-72 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135900 [exp] 274 / 7e-92 AT5G55180 142 / 7e-40 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 265 / 1e-84 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 263 / 5e-84 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 259 / 9e-83 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 243 / 4e-76 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G084900 [exp] 239 / 9e-76 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 235 / 4e-74 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.016G057400 [exp] 230 / 8e-73 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.001G192200 [exp] 232 / 2e-72 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 227 / 9e-72 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10029149 pacid=23151712 polypeptide=Lus10029149 locus=Lus10029149.g ID=Lus10029149.BGIv1.0 annot-version=v1.0 ATGAAAATGTTCATCCATGTCTTCCCCTGCATTCTTTCTTTACTCTCGATCGCTTTGCTCCATTTCCCATGTTACACAGGTAACTACAATTATAGCAATT CTTCTCTTAGTGATTTCAACCAGCTTGATCATGTAGATGCTGCACCAGTGGGAGTGTGCTACGGCAGAGTAGCCAACAACCTGCCACTTCCAGCTACGGT GGTGGGACTCCTCCAAGCCAACGGAATAAGAAACATCAGACTCTTCGACACCGACGCAGCAACACTCCGATCATTTGCCGGCACAGGAATCAGCCTCATG ATCGGCGTCCCAAACGAAAGCCTCCCTTCAATTGCATCCGGAACAGCGAATTCCACCATCGACTGGCTAATCACCAACGTCTTCGCTCACATTCCTCCTG CGCAGGTGAAATACCTCGCCGTCGGAAACGAAGCTTTCGTTAGGGATTCGTTCTACACGCCGTATGTAGTCCCGGCGGTAATCAACCTCCATGGAGCTCT CCAAACCCTAGATCTGGCGAATCGGATCAAGATTTCATCACCGCAGCCGATTTCGGTGCTATCCAGCTACTACCCTCCGTCGTCGGGCAGCTTCGATCCG ATCATCAAGCCGGCGATGATCCCGCTCCTCCAGTTCCTCCGCGACTCCAGATCTCCGCTGATGCTGAATCTCTACCCGTACGAGGCCTACGTGGCGCATA CGAACCGGATCCCGCTCGACTACGTGCTGTTCAAGACGGACGGCGAGTTCGGCGACGCGGGGCTGATGTACGACAACTTACTCGACGCGAACATCGACGC GTTCATCCACGCGATGGATAGGGAGGGTTTTCAAGGGATTAAGGTCGTGGTGGCGGAGACAGGGTGGCCGACGGCGTGTGGAGAGGCGGCGAGTGTGGAT AACGCACTGACGTATAACGATAATGTTGTGCGGCGGACGGCGAACGACGTCGGGACGCCGAAGCGGCCGAAGGAGGAGGTGGAGGTTTACTTGTTTGATT TGTTTGATGAGAACGAAAGAGGTGGGAATGAGTATGAGAAGCATTACGGGATCTTCACCCCTGCTGGGGTTAAGCTTTACGATCTTAGATTTAGCAATAA TTAG
AA sequence Show only first row Show all	>Lus10029149 pacid=23151712 polypeptide=Lus10029149 locus=Lus10029149.g ID=Lus10029149.BGIv1.0 annot-version=v1.0 MKMFIHVFPCILSLLSIALLHFPCYTGNYNYSNSSLSDFNQLDHVDAAPVGVCYGRVANNLPLPATVVGLLQANGIRNIRLFDTDAATLRSFAGTGISLM IGVPNESLPSIASGTANSTIDWLITNVFAHIPPAQVKYLAVGNEAFVRDSFYTPYVVPAVINLHGALQTLDLANRIKISSPQPISVLSSYYPPSSGSFDP IIKPAMIPLLQFLRDSRSPLMLNLYPYEAYVAHTNRIPLDYVLFKTDGEFGDAGLMYDNLLDANIDAFIHAMDREGFQGIKVVVAETGWPTACGEAASVD NALTYNDNVVRRTANDVGTPKRPKEEVEVYLFDLFDENERGGNEYEKHYGIFTPAGVKLYDLRFSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	0	1
AT3G50390			Transducin/WD40 repeat-like su...		Lus10022475 [exp]	4.5	0.7792
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	4.6	0.8082
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	5.3	0.8084
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	7.9	0.7240
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	8.1	0.8087
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10012598 [exp]	12.4	0.7572
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	18.7	0.7949
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	22.5	0.7082
AT3G56820			unknown protein		Lus10012105 [exp]	24.0	0.8004
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	25.5	0.7721

Compare expression of checked genes

Lus10029149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.