Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013015 [exp] 96 / 5e-25 AT1G23530 51 / 4e-08 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029150 pacid=23151732 polypeptide=Lus10029150 locus=Lus10029150.g ID=Lus10029150.BGIv1.0 annot-version=v1.0 ATGGCTACCCTTCCACAGGCAGATCAGCAGCAACCCCAACAGCAGGGTATCGGGTTCGCAGTCCCGGTTCCGGGCGGGAACCAGCGGGTTGAACCGGTTC AGCACTCGAACGGGTCGTTCGGCAAGAGCAAGCATCAAGGGAGTGGGAAACCGAAGAAGAACAAGAAGGAGAAGAAAGATAAGAAAAGTAGTAACAAAAA CCAGAAGCCGCAGATGCAGAGTAACTCGAAAGTGATGCAGAGTGACGATGACGACATAGAGTTTGGGTTCGGGAAAGGTGGCGGGCTTGGTAGGCCAATG GCGGGGATGAGGGAAGGGCCTAATGGGCCTCATCATAAGATGATGGGTCCGCCTCCTCCTGGATTTTTTCCTCCTCATGGGCCTCCTCAAATGCAGCAGA AGCCCAGTCAGCATCAGCATCAGCAGAAGAAGGGGCATAGTGGTAATAATCATCATAGTGGTCGCTTCAAGGGTGGTGATGGGAATCATGGTGGTTATCC CACAATGGAGTTTCATGATGGAGAGCCTTTTAGGCATTGA
AA sequence Show only first row Show all	>Lus10029150 pacid=23151732 polypeptide=Lus10029150 locus=Lus10029150.g ID=Lus10029150.BGIv1.0 annot-version=v1.0 MATLPQADQQQPQQQGIGFAVPVPGGNQRVEPVQHSNGSFGKSKHQGSGKPKKNKKEKKDKKSSNKNQKPQMQSNSKVMQSDDDDIEFGFGKGGGLGRPM AGMREGPNGPHHKMMGPPPPGFFPPHGPPQMQQKPSQHQHQQKKGHSGNNHHSGRFKGGDGNHGGYPTMEFHDGEPFRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029150 [exp]	0	1
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	3.2	0.8182
AT1G52140			unknown protein		Lus10025828 [exp]	6.9	0.8477
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	7.1	0.8280
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	7.7	0.8098
AT5G47830			unknown protein		Lus10024804 [exp]	8.1	0.7899
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	9.4	0.8167
AT1G64700			unknown protein		Lus10001663 [exp]	9.8	0.8182
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	11.4	0.8283
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10037778 [exp]	14.1	0.7744
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	15.4	0.8177

Compare expression of checked genes

Lus10029150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.