Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23540 574 / 0 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 567 / 0 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 507 / 4e-175 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G38560 468 / 2e-160 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70450 458 / 2e-160 Protein kinase superfamily protein (.1) AT1G68690 468 / 7e-160 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 459 / 6e-156 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 443 / 5e-151 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 412 / 1e-140 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT4G34440 415 / 9e-140 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013014 [exp] 889 / 0 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013013 [exp] 886 / 0 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10030879 [exp] 669 / 0 AT1G70460 542 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10034082 [exp] 462 / 4e-157 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 461 / 6e-157 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10011098 [exp] 449 / 5e-153 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 442 / 4e-150 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 438 / 5e-149 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10017898 [exp] 429 / 1e-144 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189700 [exp] 592 / 0 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 471 / 7e-161 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 466 / 5e-159 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 454 / 3e-154 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 452 / 3e-153 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.018G081300 [exp] 439 / 5e-149 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 420 / 1e-142 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 420 / 4e-142 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 404 / 7e-137 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 403 / 2e-135 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029151 pacid=23151693 polypeptide=Lus10029151 locus=Lus10029151.g ID=Lus10029151.BGIv1.0 annot-version=v1.0 ATGACTCCCCCTAGCAACTTCTCTCCTTTGCAGCAGTCAGCAGACCCATACTACTACGGACAAACTCCAAATTCAAATGCATTCTCTAGCCAGAACGACT CCTACGTATCACAGCAACATTCTGGGGCATTTGGAACGGCATCTGGAGGACCGGATTCGGGACTAATAACCAGCGGGAAGTCATTCTTCAGTTACGATGA AGTGATGGAGATGACGAGGGGATTTGCTAGGAAGAACATAATAGGGGAAGGGGGATTCGGATACGTGTTCAAAGGGTGGCAGCCGGACGGGAAGTTGGTG GCGGTGAAGCAACTCAAGGCAGGGAGTGGACAGGGAGACAGGGAATTTAAAGCCGAGGTTGAGATTATTAGCCGTGTTCATCATCGGCACCTTGTTTCTT TGGTTGGTTACTCCATGTCTGATCAGCAGAAGCTGCTCATTTATGAGTTTCTTCCTAACAACACTCTTGAGCATCACTTGCACGCGGAAGGGTCAGGGTT GACTTGGCAACAAAGGCTCAAAATTGCTATTGGTTCAGCCAAGGGATTGGCTTACTTGCATGAAGATTGTAACCCAAAAATCATTCATCGAGATATTAAG TCGGCCAACATTTTGCTGACTGATGATTTCGAAGCACAGGTTGCAGACTTTGGTCTTGCCAGGCTGAACGATACAACTCAGACTCACGTGTCAACTCGCG TCATGGGAACATTCGGGTACCTAGCGCCAGAGTATGCGCAAAGTGGGAAGCTAACTGATAGATCGGACGTGTATTCATTTGGGGTTGTCCTTCTTGAGCT TATAACTGGACGGAAGCCTGTTGATTCGACTCGTCCCCTTGGGGATGAAAGCCTAGTTGAATGGGCTCGTCCACACCTAATGCACGCCATGGAGACAGGA GATCTTGGCGAGCTAGTAGATCCACGGCTCAAGAAGCGATACGTGGAGACAGATATGATGAGGATGATCGAGACGGCTGCTGCCTGCACCCGCCACTCTG CTCCCAAGAGACCAAGAATGGTGCAGGTGGTGAGAGCGTTGGACAGCGAACAATCGGGGGACCTGACAAATGGGATGCAGTACGGGCAGAGCACAATGTA CGACTCGGGTCAGTACAACGAAGAGATCCTGAAGTTCAGGAGGATGGCATTGGGTTCCGACGACGGCAATGGAGATTTTGGTTACAGTGGTGGGTTCTCC ACTAGAGATACGATGTTGTCTCACGGTCAACAAACTCCGACGGGCGAATTCAGCAGCGGAGAAATTGAAACTCGAGCCATTAACACACCTTCTTCCAGAA ACTGGTAA
AA sequence Show only first row Show all	>Lus10029151 pacid=23151693 polypeptide=Lus10029151 locus=Lus10029151.g ID=Lus10029151.BGIv1.0 annot-version=v1.0 MTPPSNFSPLQQSADPYYYGQTPNSNAFSSQNDSYVSQQHSGAFGTASGGPDSGLITSGKSFFSYDEVMEMTRGFARKNIIGEGGFGYVFKGWQPDGKLV AVKQLKAGSGQGDREFKAEVEIISRVHHRHLVSLVGYSMSDQQKLLIYEFLPNNTLEHHLHAEGSGLTWQQRLKIAIGSAKGLAYLHEDCNPKIIHRDIK SANILLTDDFEAQVADFGLARLNDTTQTHVSTRVMGTFGYLAPEYAQSGKLTDRSDVYSFGVVLLELITGRKPVDSTRPLGDESLVEWARPHLMHAMETG DLGELVDPRLKKRYVETDMMRMIETAAACTRHSAPKRPRMVQVVRALDSEQSGDLTNGMQYGQSTMYDSGQYNEEILKFRRMALGSDDGNGDFGYSGGFS TRDTMLSHGQQTPTGEFSSGEIETRAINTPSSRNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10029151 [exp]	0	1
AT4G33830			Glycosyl hydrolase family 10 p...		Lus10014645 [exp]	24.4	0.5888
AT1G03670			ankyrin repeat family protein ...		Lus10000916 [exp]	68.1	0.5181
					Lus10017946 [exp]	72.4	0.5630
AT2G17030			F-box family protein with a do...		Lus10022618 [exp]	111.3	0.4953
AT5G01750			Protein of unknown function (D...		Lus10020780 [exp]	123.5	0.5064
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10012699 [exp]	124.0	0.4808
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	183.6	0.4982
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	206.2	0.4835

Compare expression of checked genes

Lus10029151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.