Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23550 215 / 3e-67 SRO2 similar to RCD one 2 (.1) AT5G62520 194 / 2e-59 SRO5 similar to RCD one 5 (.1.2) AT1G70440 190 / 6e-58 SRO3 similar to RCD one 3 (.1) AT3G47720 149 / 4e-42 SRO4 similar to RCD one 4 (.1) AT1G32230 139 / 2e-36 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) AT2G35510 108 / 1e-25 SRO1 similar to RCD one 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013012 [exp] 631 / 0 AT1G23550 218 / 1e-68 similar to RCD one 2 (.1) Lus10030611 [exp] 336 / 3e-114 AT1G23550 219 / 7e-69 similar to RCD one 2 (.1) Lus10030878 [exp] 335 / 8e-114 AT1G23550 223 / 1e-70 similar to RCD one 2 (.1) Lus10030991 [exp] 107 / 2e-25 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Lus10035390 [exp] 96 / 2e-21 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231100 [exp] 221 / 2e-69 AT1G23550 207 / 2e-64 similar to RCD one 2 (.1) Potri.012G081100 [exp] 221 / 8e-69 AT5G62520 243 / 2e-78 similar to RCD one 5 (.1.2) Potri.015G076500 [exp] 213 / 8e-66 AT5G62520 251 / 2e-81 similar to RCD one 5 (.1.2) Potri.006G231600 [exp] 204 / 7e-63 AT1G23550 185 / 6e-56 similar to RCD one 2 (.1) Potri.018G055100 [exp] 201 / 1e-61 AT1G23550 208 / 5e-65 similar to RCD one 2 (.1) Potri.006G231500 [exp] 194 / 3e-59 AT1G23550 219 / 2e-69 similar to RCD one 2 (.1) Potri.001G137200 [exp] 157 / 6e-43 AT1G32230 479 / 6e-163 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.002G112300 [exp] 143 / 2e-38 AT2G35510 185 / 4e-52 similar to RCD one 1 (.1) Potri.003G096700 [exp] 125 / 2e-31 AT1G32230 451 / 4e-152 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.005G149701 [exp] 79 / 8e-18 AT2G35510 81 / 4e-19 similar to RCD one 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain
Representative CDS sequence Show only first row Show all	>Lus10029152 pacid=23151812 polypeptide=Lus10029152 locus=Lus10029152.g ID=Lus10029152.BGIv1.0 annot-version=v1.0 ATGATTGGCAACGCTTACTTGATGAATGTGAATGCTGCTGCAGCAGGATTCTCCGCCGCTGTTCTTCTTCAGGGGCAGAGGATTCCAGGTCTCGTTCCTG CGCATGAGCAGCAAGAAACGATTTCAATTGACGATCACGAAATTTTGAAGGCGGATTCGGATTCCGACGAGTCTCCCGCCAAAGATTCCAATCGCGGCGG AAGAAGCAGAGGCGGCGGAGAGTTCGAGGATTTCACTAGGAACGGATTCGCGCCGATCCAGGGGGATACCTCCCACTACGCGGCAATCAAGAAGTGCTTC ACCGATGGGTTAGGGCAACGCGCCGCCGCTTCCGGCGTGGCGGCTCGGGGGGGAAGGGTCATGGCGATTCACAGGAACTCGATGTCTGGTCCGAATGCGA AGGCGCGGTTCATCTCGTTCCGGGCGAACGAGAAGGGGATTGCGGAGAAGTGCGGCGGCGGCCAGGCGCAGGCTAGGTACGCTTGGTACGGCGCTTCCAG AGATGAGATCCGGCAGATTCTGAGCTTCGGATTCAGTCGGTGCGCCGGTGGTCACGGATTCGGCGTTCATCTCTCCGCCATCTCATTCCCCACCGACTGC TTTGATTCAGCGACTGCTGACGAAGACGGGAACAAGCACTTGATACTGTGCCGTGTATTGCTTGGCAAAGTTGAACCAATCTCTGCTGGATCAACCCAAT CGGCGCCCAGTTCTCTTGAATACGATTCCGGAGTGGACGATTTGACCAACACAAGAAAATACATCGTCTGGAGTTGCTTCATGAATTCGCATATATTCCC TGCTTTCATCATCAGCTTCAAGGAACCTGCTACTACGAATGTGAATGGATTGAACAGAGGTCCACCAGTGAGCACAACCAGACCCAGATCTCCCTGGATG AGCTTCCCTGCTCTGTTAAGGTTCCTTTCAGGATTGTTGGATCCAACCATCATGACCATGGTCTCAAAGAGTTACGAGGACTTCCGGCATCACAAGATCT CTAGGGAGCAAATGATTAGAGTAACAAGGCGGCTTGTTGGGGATGAACTGTTAACTTCAGTAGTCAGAAATCACCAAAAGGTACATTTAGTTTCATGTTG A
AA sequence Show only first row Show all	>Lus10029152 pacid=23151812 polypeptide=Lus10029152 locus=Lus10029152.g ID=Lus10029152.BGIv1.0 annot-version=v1.0 MIGNAYLMNVNAAAAGFSAAVLLQGQRIPGLVPAHEQQETISIDDHEILKADSDSDESPAKDSNRGGRSRGGGEFEDFTRNGFAPIQGDTSHYAAIKKCF TDGLGQRAAASGVAARGGRVMAIHRNSMSGPNAKARFISFRANEKGIAEKCGGGQAQARYAWYGASRDEIRQILSFGFSRCAGGHGFGVHLSAISFPTDC FDSATADEDGNKHLILCRVLLGKVEPISAGSTQSAPSSLEYDSGVDDLTNTRKYIVWSCFMNSHIFPAFIISFKEPATTNVNGLNRGPPVSTTRPRSPWM SFPALLRFLSGLLDPTIMTMVSKSYEDFRHHKISREQMIRVTRRLVGDELLTSVVRNHQKVHLVSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	0	1
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	1.4	0.8756
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	3.5	0.8431
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	4.5	0.8265
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	4.5	0.8747
					Lus10029851 [exp]	9.4	0.8290
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	13.2	0.7358
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	13.9	0.7766
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	14.0	0.7305
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	14.3	0.8459
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	15.6	0.8277

Compare expression of checked genes

Lus10029152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.