Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70420 127 / 5e-35 Protein of unknown function (DUF1645) (.1) AT1G23710 101 / 3e-25 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013011 [exp] 406 / 1e-144 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10030612 [exp] 172 / 2e-52 AT1G70420 155 / 8e-46 Protein of unknown function (DUF1645) (.1) Lus10030876 [exp] 171 / 6e-52 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1) Lus10002380 [exp] 44 / 5e-05 AT1G70420 78 / 1e-16 Protein of unknown function (DUF1645) (.1) Lus10042116 [exp] 42 / 0.0001 AT1G70420 61 / 2e-11 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041300 [exp] 95 / 5e-23 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.012G081000 [exp] 86 / 1e-19 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 80 / 4e-17 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 66 / 3e-12 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 60 / 1e-10 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.018G096600 [exp] 57 / 1e-09 AT1G23710 76 / 2e-16 Protein of unknown function (DUF1645) (.1) Potri.018G096400 [exp] 40 / 0.0003 AT1G23710 58 / 9e-11 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10029153 pacid=23151829 polypeptide=Lus10029153 locus=Lus10029153.g ID=Lus10029153.BGIv1.0 annot-version=v1.0 ATGGAGACGATGAGTTCAGTATTAGCTCTCAACCCAATCTACTCACAGACCGACAGTCAATTCGTCCAGGATTTCTGGCTCAAGCTCAAGCTAATGGAAG AGGATAAGGACGACCGTCAACCCGTTGCTCAGAAGGACGTCGCTTTGCAGACCCACCAGAACGAAAAAGCAGAGCAAATCGGAGCAATTGTCGATGAGAA ATCGGACTCCGAGCGGCAAGATGGTGAAGATTTCCAGGAAGAAGAAGCGGAAGAGGAGGAATTCAGTTTTTCCAGCGCTTTCAGCGAAGAACCGTTGATT TCCGCCGAGGAAGCGTTCTTAAACGGCCAGATCCGTCCGGTTTTCCCGCTGTTTGACCGAGATCTGCTCCTCTCCGACGAGATTGACGCTAATCCGGAAG GGTCGTACTGCGAGTGGAGCGGGAAGAAACCTTCTAACGCCTCTACGACGTCGGCGGTTGTGGTCGACGCGTCGCCGGATGTCTGCAAGAAGAGCAACTC CACCGGGTTCTGTAAGCTCCGGCGGTTTCGGGAGCTCGTCCTACGGAGCAACAGCGACGGCAAGGACAAGTTCGCCTTCCTCAACGAAGCATCCGGTAGC AGTAAAGGGAAGAAGAAGACGGAAAAAGTCACTAAATCCTCCACGTCGGCGGCGAAGAAGAAGGAGAAGGAAACGGCGTCGTCGGCGTTCGAGAAGATAT ACGCCCAGCGGAAGAAGGAGGAAACGGGGAAGAGATTGTCGTATCTGCCGTACAAGCAAGTAGGGTTCTTCGCCAGCGTTAATGGATTGAGCAAGAACGT TCATCCTTACTAA
AA sequence Show only first row Show all	>Lus10029153 pacid=23151829 polypeptide=Lus10029153 locus=Lus10029153.g ID=Lus10029153.BGIv1.0 annot-version=v1.0 METMSSVLALNPIYSQTDSQFVQDFWLKLKLMEEDKDDRQPVAQKDVALQTHQNEKAEQIGAIVDEKSDSERQDGEDFQEEEAEEEEFSFSSAFSEEPLI SAEEAFLNGQIRPVFPLFDRDLLLSDEIDANPEGSYCEWSGKKPSNASTTSAVVVDASPDVCKKSNSTGFCKLRRFRELVLRSNSDGKDKFAFLNEASGS SKGKKKTEKVTKSSTSAAKKKEKETASSAFEKIYAQRKKEETGKRLSYLPYKQVGFFASVNGLSKNVHPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	0	1
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	1.7	0.8729
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	1.7	0.8892
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	3.5	0.8752
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	6.0	0.8724
AT1G29290			unknown protein		Lus10029256 [exp]	6.0	0.8691
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	6.5	0.8589
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	7.1	0.8485
AT1G76600			unknown protein		Lus10037249 [exp]	8.1	0.8718
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	9.4	0.8126
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	9.5	0.8292

Compare expression of checked genes

Lus10029153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.