Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23490 97 / 7e-25 unknown protein AT5G23510 94 / 1e-24 unknown protein AT5G08440 84 / 3e-20 unknown protein AT3G03560 76 / 3e-17 unknown protein AT2G34680 46 / 8e-07 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019229 [exp] 101 / 3e-26 AT5G23490 667 / 0.0 unknown protein Lus10004286 [exp] 99 / 2e-25 AT5G23490 622 / 0.0 unknown protein Lus10020297 [exp] 80 / 1e-18 AT3G03560 489 / 3e-164 unknown protein Lus10005694 [exp] 80 / 2e-18 AT3G03560 501 / 3e-174 unknown protein Lus10023270 [exp] 50 / 5e-08 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10038534 [exp] 46 / 1e-06 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10020293 [exp] 38 / 0.0008 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133700 [exp] 100 / 1e-25 AT5G23490 627 / 0.0 unknown protein Potri.013G073400 [exp] 73 / 3e-16 AT3G03560 568 / 0.0 unknown protein Potri.001G357700 [exp] 45 / 1e-06 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 43 / 1e-05 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029154 pacid=23151859 polypeptide=Lus10029154 locus=Lus10029154.g ID=Lus10029154.BGIv1.0 annot-version=v1.0 ATGCCTGAAGTGGTTGGGTTGGAAGTAGTAGCTGCATCAGGGGAAGCAATCATCATCCCAGGGACGACCCATCTCCAAGCTTGTGGCTACTCTCAATATG GCACTGTTTCCTGCGTTTTCTCTTGGCTCAGGATTTCTGAAGATGGTATGGTGACTACTATTGAAGGAGCTGACTCAGCGACGTACCAAGTGAGCGAGGA TGACGTGGACTTCTACGTGACAGTCCGAGTGCAGCCCCTTGATAGCCGTGGCCGAAAGGGGGAAGCAGTGCAGGCTTTTGCCAATGGTGGAAGGAAAATC GCCCATTTGGCTGAAATTCAGTGCTAG
AA sequence Show only first row Show all	>Lus10029154 pacid=23151859 polypeptide=Lus10029154 locus=Lus10029154.g ID=Lus10029154.BGIv1.0 annot-version=v1.0 MPEVVGLEVVAASGEAIIIPGTTHLQACGYSQYGTVSCVFSWLRISEDGMVTTIEGADSATYQVSEDDVDFYVTVRVQPLDSRGRKGEAVQAFANGGRKI AHLAEIQC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23510			unknown protein		Lus10029154 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	1.4	0.9110
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	2.8	0.8780
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	3.5	0.8698
					Lus10023763 [exp]	8.9	0.8583
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	10.0	0.8207
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	10.6	0.8328
AT5G42290			transcription activator-relate...		Lus10021820 [exp]	14.1	0.8020
					Lus10008388 [exp]	17.7	0.8050
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	20.4	0.8524
AT4G05230			Ubiquitin-like superfamily pro...		Lus10018369 [exp]	20.9	0.7171

Compare expression of checked genes

Lus10029154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.