Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23750 206 / 9e-70 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 202 / 3e-68 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G33845 182 / 8e-60 Nucleic acid-binding, OB-fold-like protein (.1) AT4G28440 165 / 2e-53 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 159 / 3e-51 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013010 [exp] 273 / 3e-96 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030617 [exp] 209 / 6e-71 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030871 [exp] 207 / 5e-70 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1) Lus10015411 [exp] 178 / 3e-58 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013989 [exp] 175 / 4e-57 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002172 [exp] 157 / 2e-50 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039889 [exp] 152 / 3e-48 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041000 [exp] 218 / 2e-74 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 213 / 1e-72 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1) Potri.011G114800 [exp] 187 / 7e-62 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 186 / 2e-61 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 179 / 3e-59 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G014400 [exp] 174 / 6e-57 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029155 pacid=23151757 polypeptide=Lus10029155 locus=Lus10029155.g ID=Lus10029155.BGIv1.0 annot-version=v1.0 ATGGCAGAGGGAAAACAAGAATTGAGGAAGCCTGTATTCACCAAGGTCGAGCAACTTCGTCCAGGGACTACTGGGCACACCTTGACAGTAAAGGTTTTAA GCACAAAAATGGTGAAGGTGGGTCGTTCAGATGGTCCTCAAATGCGCCAAAATCGGCTTGCAGAGTGTTTGGTTGGTGATGAGACTGGGATTATTATATT CACCGCAAGGTTTGATCAAGTGGACTTGATGAAGGAAGGAACAACGGTGATCCTCCGCAATGCGAAAATTGACATGTACAAAGGATCGATGAGGCTTGCT GTGGACAAGTGGGGACGTATTGAAGAAGTGTCCGAGCCTGAAAGCATCAAAGTTAAGGAAGACAACAACCTCTCGCTCATCGAATATGAGGTCATCACCA TTGTAGAAGACTGA
AA sequence Show only first row Show all	>Lus10029155 pacid=23151757 polypeptide=Lus10029155 locus=Lus10029155.g ID=Lus10029155.BGIv1.0 annot-version=v1.0 MAEGKQELRKPVFTKVEQLRPGTTGHTLTVKVLSTKMVKVGRSDGPQMRQNRLAECLVGDETGIIIFTARFDQVDLMKEGTTVILRNAKIDMYKGSMRLA VDKWGRIEEVSEPESIKVKEDNNLSLIEYEVITIVED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	0	1
AT4G20150			unknown protein		Lus10038391 [exp]	1.0	0.8879
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10002788 [exp]	5.2	0.8549
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	5.3	0.8793
AT5G03345			unknown protein		Lus10013817 [exp]	6.3	0.8649
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	8.7	0.8241
AT5G49210			unknown protein		Lus10036792 [exp]	8.9	0.8301
AT5G49210			unknown protein		Lus10037138 [exp]	9.2	0.8619
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10016132 [exp]	9.5	0.8523
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	10.7	0.8734
AT1G07170			PHF5-like protein (.1.2.3)		Lus10040654 [exp]	12.5	0.8470

Compare expression of checked genes

Lus10029155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.