Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70370 794 / 0 PG2 polygalacturonase 2 (.1.2) AT1G23760 773 / 0 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G60390 736 / 0 PG1 polygalacturonase 1 (.1) AT5G25610 115 / 1e-27 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 96 / 8e-22 ATUSPL1 unknown seed protein like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013009 [exp] 1183 / 0 AT1G70370 834 / 0.0 polygalacturonase 2 (.1.2) Lus10034881 [exp] 661 / 0 AT1G70370 682 / 0.0 polygalacturonase 2 (.1.2) Lus10033417 [exp] 656 / 0 AT1G70370 681 / 0.0 polygalacturonase 2 (.1.2) Lus10022114 [exp] 131 / 7e-33 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 129 / 5e-32 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007011 [exp] 120 / 4e-30 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10026333 [exp] 117 / 1e-29 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10003263 [exp] 115 / 5e-28 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10040475 [exp] 112 / 2e-27 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190000 [exp] 873 / 0 AT1G70370 841 / 0.0 polygalacturonase 2 (.1.2) Potri.010G040800 [exp] 865 / 0 AT1G70370 819 / 0.0 polygalacturonase 2 (.1.2) Potri.012G079200 [exp] 721 / 0 AT1G70370 747 / 0.0 polygalacturonase 2 (.1.2) Potri.006G243700 [exp] 133 / 6e-34 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 132 / 2e-33 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 129 / 9e-33 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 129 / 1e-32 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 126 / 6e-32 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 126 / 8e-32 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 128 / 9e-32 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10029156 pacid=23151660 polypeptide=Lus10029156 locus=Lus10029156.g ID=Lus10029156.BGIv1.0 annot-version=v1.0 ATGAAGCTCCATGGCTGCTTCTTCCTGTTCATCCTCCTCTCGGTTGTTTCAGCCTCGGAGACGAATCCCTTCACTCCTAAGGCGGCTCTGGTTCGCTACT GGAACAAGGAGATCCGTACGGGACTCCCGAAATCCGATTTCCTAATCTCGAAAGCGTCGCCGCTGACCACCGTCCAGTCGGCTCTCTTCGCCAAGCTAGC GGCGCAGAATGCTCTGTCTACTCAGCTCCCGGCGTTCTGCTCCGCCGCGAAGCTCCTCTGCTTCCCGGAGCTGGCCGCCAGTTTGGAGAAGCATGACAAA GACTCCAACTTTGCCGTCTATTCGAACAAGAACTTCACAAATTACGGCACGACCGCCGCCGGAGGGATGGACTCGTTCAAGAACTACTCCGACGGGGAGA ATCTGCCTTTAGATTCGTTCCGCCGGTACAGTCGCGACGCCGCCGGCCACATCGACAAGTTCGCGAACTACGCACCCGGGACTAACGTCGCTGACCAGAG CTTCAACACGTACGCCGCCGGTGCCGTCGGCGGCAGGGGAGACTTCAAGGCGTACATGGAGCAGATAAACGTACCCAATCTTCGGTTCACTTCTTACTCG CAAGAAGCCAACGGTAGGGCCCACGGGTTCACGAGCTATAATAAAGATTCCAATTCCGGGAACCAAGGGTTTACTAGCTACGGCAAGAACGGGAACGGGG CTCCGAATGAGTTCGCCGGGTACGGCGAGAACGCGAATGTCATCGGGTCGGGTTTCACGAACTACGCTGAGACGGGGAACGGAGGTAACGATACTTTTAC TTCGTACGGGTTTAACGGGAATGTGCCGGAGAATAATTTCAGGAACTACGGCGACGGAGGAAACGGCGGCGTGGATGGATTCACTTCTTACAGAGACCAG TCAAACGTCGGCGACGATTCTTTCCAGTCGTATGCGAAGAACTCCAATGCGGCGAAGGTCGATTTCGTCAATTACGGGAAATCGTTCAACGAAGGGACTG ATAAATTCACCGGGTACGGACAGGGAGCGAACGGGGAGAAGATTGGATTCAAAGGCTACGGAGTGAATAATACATTCAAGGATTATACAAAGACTGCTGG AGCTGTAACTTTCGCCGGGTACACGAATCGGAGTTCTTCTTCGGAGGAGATGAAGGTGAGTGGCAGATTGGTAAATAAGTGGGTGGAGCCGGGCAAATTC TTCAGGGAGAAGGAGCTGAAAAAGGGAAATACAATGCCGATGCCGGACATTCGAGACAAAATGCCGGAAAGGTCTTTTCTGCCCCGGACGATTATCTCGA AGCTCCCGTTCGCGAGCTCGAAGATCGATGAGCTGAAGCAGATCTTCCGAGCGGAGGAGAACTCGTCGATGGAGGCGATGATCAAGAACTCTCTGACGGA GTGCGAGAGGGCGCCGAGTCCCGGCGAGACGAAGCGGTGCGTCGGGTCGGCGGAGGACATGATCGACTTCGCCACGTCGGTGCTCGGCCGGAACGTGGAG CTACGGACGACGGCGAATGTTAAGGGATCGAAGCAGGACATCTTGATCGGAGACGTTAAGGGGATCAACGGCGGTAAAGTCACGAAATCCGTGTCTTGCC ACCAGAGTTTGTACCCTTACCTACTCTATTACTGTCACTCGGTTCCCAAAGTCCGGGTCTACGAAGCGGACATTATCGACCCGAATAGCAAGGCCCGGGT CAACCACGGTGTCGCCATCTGTCACATTGATACGTCGTCGTGGAGCCCCACCCACGGAGCTTTCCTGGCTCTGGGGTCGGGTCCGGCGGTGTGCCACTGG ATATTTGAGAACGACCTGACTTGGACCATTGCTGATTCGGGTTCGGATTAA
AA sequence Show only first row Show all	>Lus10029156 pacid=23151660 polypeptide=Lus10029156 locus=Lus10029156.g ID=Lus10029156.BGIv1.0 annot-version=v1.0 MKLHGCFFLFILLSVVSASETNPFTPKAALVRYWNKEIRTGLPKSDFLISKASPLTTVQSALFAKLAAQNALSTQLPAFCSAAKLLCFPELAASLEKHDK DSNFAVYSNKNFTNYGTTAAGGMDSFKNYSDGENLPLDSFRRYSRDAAGHIDKFANYAPGTNVADQSFNTYAAGAVGGRGDFKAYMEQINVPNLRFTSYS QEANGRAHGFTSYNKDSNSGNQGFTSYGKNGNGAPNEFAGYGENANVIGSGFTNYAETGNGGNDTFTSYGFNGNVPENNFRNYGDGGNGGVDGFTSYRDQ SNVGDDSFQSYAKNSNAAKVDFVNYGKSFNEGTDKFTGYGQGANGEKIGFKGYGVNNTFKDYTKTAGAVTFAGYTNRSSSSEEMKVSGRLVNKWVEPGKF FREKELKKGNTMPMPDIRDKMPERSFLPRTIISKLPFASSKIDELKQIFRAEENSSMEAMIKNSLTECERAPSPGETKRCVGSAEDMIDFATSVLGRNVE LRTTANVKGSKQDILIGDVKGINGGKVTKSVSCHQSLYPYLLYYCHSVPKVRVYEADIIDPNSKARVNHGVAICHIDTSSWSPTHGAFLALGSGPAVCHW IFENDLTWTIADSGSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	0	1
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	2.0	0.8416
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	2.8	0.8423
AT3G55550			Concanavalin A-like lectin pro...		Lus10010867 [exp]	3.5	0.7977
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	8.9	0.8183
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	11.5	0.8065
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	13.0	0.7924
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	14.7	0.8049
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	14.9	0.8242
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	15.5	0.8055
AT1G74160			unknown protein		Lus10034678 [exp]	15.8	0.8008

Compare expression of checked genes

Lus10029156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.